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Table 1 Correlation between Phased An/Tn Cluster (PATC) content and preference for interaction with chromosome arms

From: A streamlined tethered chromosome conformation capture protocol

Correlations for arms regions ONLY

chrI

chrII

chrIII

chrIV

chrV

chrX

log2(arms/centers) vs. PATCs 25KB Pearson R values

0.38

0.37

0.17

0.44

0.26

0.51

log2(arms/centers) vs. PATCs 25KB Spearman R values

0.36

0.50

0.18

0.45

0.48

0.49

log2(arms/centers) vs. PATCs 50KB Pearson R values

0.50

0.58

0.25

0.54

0.30

0.63

log2(arms/centers) vs. PATCs 50KB Spearman R values

0.46

0.60

0.25

0.55

0.58

0.61

  1. To measure correlation of inter-chromosomal contacts between chromosomal arms regions (defined according to [20]) and PATC enrichment we divided the genome into 25KB (50KB) non-overlapping intervals. For each interval we measured the enrichment for PATC by counting the number of locations with high PATC score (defined as regions with a score of >55 using the algorithm of [29]). In order to measure the level of enrichment of inter-chromosomal arm-arm contacts over the arm-centers contacts we calculate the number of inter-chromosomal arm-arm contacts and number of inter-chromosomal arm-center contacts for every interval. Log2 value of the enrichment for inter-chromosomal arm-arm contacts is used to calculate correlation with PATC enrichment in different genomic regions