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Table 3 Mapping statistics for different experimental replicates

From: A streamlined tethered chromosome conformation capture protocol

Technology

NextSeq 38X2

NextSeq 38X2

NextSeq 38X2

NextSeq 38X2

Sample

N2 Adults AvaII

N2 Adults DpnII

glp-1 Adults AvaII

glp-1 Adults DpnII

GEO accession

GSM2041037 - SRR3105473

GSM2041038 - SRR3105476

GSM2041039 - SRR3105478

GSM2041040 – SRR3105481

Total number of reads

92,039,660

101,295,678

67,052,017

195,829,257

Both sides aligned

50,361,629

54,717,285

34,869,674

101,403,196

Concordant Pairs

15,870,773

20,572,866

11,655,151

30,231,656

intra-chromosomal Pairs

3,131,465

14,303,981

4,519,524

17,089,727

inter-chromosomal Pairs

1,207,782

4,628,515

1,182,249

5,294,659

Hi-C valid pairs

4,339,247

18,932,496

5,701,773

22,384,386

% Hi-C valid pairs

8.6

34.6

16.4

22.1