Skip to main content

Table 4 Mapping statistics for different experimental replicates

From: A streamlined tethered chromosome conformation capture protocol

Technology

MiSeq 78X2

MiSeq 78X2

MiSeq 78X2

MiSeq 78X2

Sample

N2 Adults AvaII

N2 Adults DpnII

glp-1 Adults AvaII

glp-1 Adults DpnII

GEO accession

GSM2041037- SRR3105474

GSM2041038 - SRR3105477

GSM2041039 - SRR3105479

GSM2041040 –SRR3105482

Total number of reads

6,209,078

6,763,705

5,447,839

9,770,754

Both sides aligned

4,206,958

4,879,863

3,807,291

6,697,162

Concordant Pairs

2,888,881

2,439,233

2,284,399

3,739,874

intra-chromosomal Pairs

642,277

1,718,469

911,315

1,863,649

inter-chromosomal Pairs

223,318

553,223

223,826

573,671

Hi-C valid pairs

865,595

2,271,692

1,135,141

2,437,320

% Hi-C valid pairs

20.6

46.6

29.8

36.4