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Table 5 Mapping statistics for different experimental replicates

From: A streamlined tethered chromosome conformation capture protocol

Technology

MiSeq 250X2

MiSeq 250X2

MiSeq 250X2

MiSeq 250X2

Sample

N2 L1 Fed AvaII

N2 L1 Fed DpnII

N2 L1 Starved AvaII

N2 L1 Starved DpnII

GEO accession

GSM2041035- SRR3105469

GSM2041036- SRR3105471

GSM2041033 - SRR3105465

GSM2041034- SRR3105467

Total number of reads

5,058,249

4,682,335

6,887,612

3,716,627

Both sides aligned

2,438,224

1,576,630

3,552,524

1,987,126

Concordant Pairs

1,928,195

1,094,704

2,506,096

1,159,604

intra-chromosomal Pairs

323,168

278,034

677,872

583,798

inter-chromosomal Pairs

143,311

193,579

210,296

222,675

Hi-C valid pairs

466,479

471,613

888,168

806,473

% Hi-C valid pairs

19.1

30

25

40.6