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Table 6 Mapping statistics for different experimental replicates

From: A streamlined tethered chromosome conformation capture protocol

Technology

NextSeq 151X1

NextSeq 151X1

Sample

N2 Adults DpnII

glp-1 Adults DpnII

GEO accession

GSM2041038 – SRR3105475

GSM2041040 - SRR3105480

Total number of reads

36,806,738

55,610,584

Both sides aligned

10,674,057

5,964,566

Concordant Pairs

4,145,075

1,826,523

intra-chromosomal Pairs

2,795,635

1,649,699

inter-chromosomal Pairs

1,690,332

1,877,419

Hi-C valid pairs

4,485,967

3,527,118

% Hi-C valid pairs

42

59.1