From: A streamlined tethered chromosome conformation capture protocol
Technology | NextSeq 151X1 | NextSeq 151X1 |
---|---|---|
Sample | N2 Adults DpnII | glp-1 Adults DpnII |
GEO accession | GSM2041038 – SRR3105475 | GSM2041040 - SRR3105480 |
Total number of reads | 36,806,738 | 55,610,584 |
Both sides aligned | 10,674,057 | 5,964,566 |
Concordant Pairs | 4,145,075 | 1,826,523 |
intra-chromosomal Pairs | 2,795,635 | 1,649,699 |
inter-chromosomal Pairs | 1,690,332 | 1,877,419 |
Hi-C valid pairs | 4,485,967 | 3,527,118 |
% Hi-C valid pairs | 42 | 59.1 |