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Table 6 Apoptosis-related genes obtained comparing transcriptomes

From: Transcriptome dynamics in the asexual cycle of the chordate Botryllus schlosseri

Role

scaffold ID

vertebrate orthologous Gene Abbreviations

Gene name

Pre-TO vs MC

TO vs Pre-TO

MC vs TO

Pro apoptotic

TCONS_00024434

Pde11a

cAMP-GMP Phosphodiesterase 11A

↑

  

g19982.t1

Gapdh

glyceraldeide 3-p dehydrogenase

↓

  

g22952.t1

Aifm2

Apoptosis inducing factor 2

↓

↑

 

g8767.t1

Casp2

Caspase 2

↑

  

g6698.t1.1

Insr

Insulin receptor

↑

  

g16248.t18

Stpg1

O-Methylguanine-induced apoptosis 2

 

↑

 

Anti apoptotic

g33523.t1

Api5

Apoptosis inhibitor 5

↓

 

↑

g4758.t1

Six1

Homeodomain protein Six 1

 

↓

↑

TCONS_00107696

PLK1

Polo-like Kinase 1

↑

  

g61041.t1

Ubqln1

Ubiquilin 1

 

↓

 

g40469.t1

Egfr

Epidermal growth factor receptor

↓

  

g43714.t1

Gclc

γ-glutamyl-cysteine ligase catalytic subunit

↓

  

g7904.t1

Iap

Inhibitor of apoptosis

↑

↑

↓

Regulator

g48839.t1

Set

Template.activating factor 1

  

↑

g9434.t1

Ogt

O-N-acetylglucosamine transferase

 

↓

 

g23050.t1

Sf3b1

Splicing factor 3B, subunit 1

↓

↓

↑

g15568.t1

Scrib

Scribble

  

↑

g32829.t1.1

Dynll1

Dinein light chain 1

 

↑

↓

g49777.t1.1

Cul1

Cullin-1

 

↓

 

g63857.t1

Cbs

cystathionine-beta-synthase

 

↓

↑

Others

g1405.t1.1

Col3a1

collagen, type III, alpha 1

↓

  

g8626.t1

Aars

Alanine-tRNA ligase

  

↑

g39299.t1

Acsl1

Long chain fatty acid-CoA ligase 1

↓

  

TCONS_00030959

Ran

GTP-binding nuclear protein ran

  

↑

  1. Arrows pointing upward means up-regulation, arrows pointing downward means down-regulation. B. schlosseri transcripts code are reported in "scaffold ID" column