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Table 2 The 10 most frequent highly expressed novel miRNA candidates

From: Identification and characterization of novel and conserved microRNAs in several tissues of the Chinese rare minnow (Gobiocypris rarus) based on illumina deep sequencing technology

Name

Total count

isomiRs

Most expressed sequence

Length(nt)

Counts

Seed

Novel-21

553

31

UUACCACAGGGAUAACUG

18

232

UACCACA

Novel-16

270

4

AUCAUUUUUGUGACUAUGCAACU

23

264

UCAUUUU

Novel-7

668

9

UGAGAACUGAAUUCCAAGGGUGU

23

332

GAGAACU

Novel-127

3,127

28

AGGUGUUGGUUGAUAUAGACA

21

389

GGUGUUG

Novel-117

744

3

CUGACGUGCAAAUCGGUC

18

484

UGACGUG

Novel-118

5,064

63

UGCGGACCAGGGGAAUCC

18

484

GCGGACC

Novel-115

3,368

25

CGAAUGACUAGAGGCCUUGG

20

526

GAAUGAC

Novel-40b

1,879

4

UUGACUCUAGUCUGGCAC

18

1096

UGACUCU

Novel-59

13,127

78

CUGGCACUGUGAAGAGACAUGAGG

24

1204

UGGCACU

Novel-51

9,024

51

UGCGGGAUGAACCGAACGCC

21

1234

GCGGGAU

Novel-50

1,738

4

AACGGGCUUGGCAGAAUC

18

1272

ACGGGCU

Novel-33

3,867

15

GAUUAUGACUGAACGCCU

18

1540

AUUAUGA

Novel-15b

8,773

80

AUGGCGCUGGAGCGUCGGGCCC

22

1693

UGGCGCU

Novel-15a

16,536

59

GAUGGCGCUGGAGCGUCGGGCCC

23

2001

AUGGCGC

Novel-13

7,224

19

CAGGAUAGCUGGCGCUCGCC

20

2087

AGGAUAG

Novel-40a

117,202

112

UUGACUCUAGUCUGGCACUGUGAAGA

26

6095

UGACUCU