From: Screening of whole genome sequences identified high-impact variants for stallion fertility
SNP ID | Accession no. | Gene | Location in gene | High SNP effect | Substitution type |
---|---|---|---|---|---|
g.26775767G>C | ss1457622628 | NEURL1 | Exon 5 | Stop gained | p.S155* |
g.77472655G>C | ss1457622630 | KDR | Intron 30 | Splice site donor | Â |
g.74610774C>T | ss1457622632 | CFTR | Exon 17 | Stop gained | p.Q894* |
g.56937215C>T | ss1457622634 | OVGP1 | Exon 6 | Stop gained | p.R145* |
g.45985131A>G | ss1457622636 | FBXO43 | Exon 1 | Start lost | p.M1T |
g.82699661C>T | ss1457622637 | TSSK6 | Exon 3 | Stop gained | p.W155* |
g.7083659A>T | ss1457622638 | SLC9A3R1 | Splice site intron 9 | Splice site donor | Â |
g.40694339G>A | ss1457622640 | PKD1 | Exon 17 | Stop gained | p.W339* |
g.6704968C>T | ss1457622641 | GHRL | Splice site intron 1 | Splice site acceptor | Â |
g.19034281C>T | ss1457622642 | FOXP1 | Splice site intron 4 | Splice site donor | Â |
g.21894180G>A | ss1457622643 | FNDC3A | Splice site intron 27 | Splice site acceptor | Â |
g.32635273T>C | ss1457622644 | BTNL2 | Exon 1 | Start lost | p.M1T |
g.35255390T>C | ss1457622645 | TCP11 | Exon 1 | Start lost | p.M1T |
g.4323852G>A | ss1457622646 | SPATA31E1 | Exon 3 | Stop gained | p.R423* |
g.37453246G>C | ss1457622647 | NOTCH1 | Splice site intron 4 | Splice site acceptor | Â |
g.37455302G>A | ss1457622648 | NOTCH1 | Splice site intron 14 | Splice site donor | Â |
g.79813487A>T | ss1457622631 | ENSECAG00000020135 | n.a. | Splice site acceptor, | Â |
 |  |  |  | Splice site donor |  |
g.25184403G>C | ss1457622635 | ENSECAG00000021286 | n.a. | Splice site donor | Â |
g.30073089G>A | ss1457622639 | ENSECAG00000018118 | n.a. | Splice site donor | Â |