Table 4 Minor allele (MA), minor allele frequencies (MAF), minor genotype frequencies (MAG) for high-impact variants within candidate genes for stallion fertility validated in 337 fertile stallions

g.26775767G>C

C

0.0865

0.855

0.116

0.028

NEURL1

272/318

37/318

9/318

g.77472655G>C

C

0.1266

0.759

0.228

0.013

KDR

243/320

73/320

4/320

g.74610774C>T

T

0.0018

0.997

0.004

0

CFTR

283/284

1/284

g.56937215C>T

T

0.0556

0.889

0.111

0

OVGP1

208/234

26/234

g.45985131A>G

G

0.0158

0.968

0.032

0

FBXO43

306/316

10/316

g.82699661C>T

T

0.0338

0.933

0.068

0

TSSK6

290/311

21/311

g.7083659A>T

T

0.2919

0.509

0.398

0.093

SLC9A3R1

164/322

128/322

30/322

g.40694339G>A

A

0.0062

0.988

0.013

0

PKD1

317/321

4/321

g.6704968C>T

T

0.0125

0.978

0.019

0.003

GHRL

314/321

6/321

1/321

g.19034281C>T

T

0.0522

0.896

0.104

0

FOXP1

283/316

33/316

g.32635273T>C

C

0.3064

0.610

0.168

0.223

BTNL2

200/328

55/328

73/328

g.35255390T>C

C

0.0110

0.978

0.022

0

TCP11

310/317

7/317

g.4323852G>A

A

0.0047

0.991

0.009

0

SPATA31E1

318/321

3/321

g.37453246G>C

C

0.0113

0.978

0.023

0

NOTCH1

304/311

7/311

g.37455302G>A

A

0.1341

0.753

0.226

0.021

NOTCH1

247/328

74/328

7/328

g.79813487A>T

T

0

1

0

0

ENSECAG00000020135

74/74

g.25184403G>C

C

0

1

0

0

ENSECAG00000021286

74/74