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Table 6 Most promising high-impact variants in genes contributing to stallion fertility

From: Screening of whole genome sequences identified high-impact variants for stallion fertility

Loci for stallion fertility

 

Loci for stallion infertility

 

No obvious relation to stallion reproduction

   

Class I

Class II

Class III

SNP ID

Gene

SNP ID

Gene

SNP ID

Gene

SNP ID

Gene

g.37455302G>A

NOTCH1

g.74610774C>T

CFTR

g.79813487A>T

ENSECAG00000020135

g.32635273T>C

BTNL2

  

g.56937215C>T

OVGP1

g.25184403G>C

ENSECAG00000021286

g.7083659A>T

SLC9A3R1

  

g.45985131A>G

FBXO43

  

g.6704968C>T

GHRL

  

g.82699661C>T

TSSK6

  

g.26775767G>C

NEURL1

  

g.40694339G>A

PKD1

  

g.77472655G>C

KDR

  

g.19034281C>T

FOXP1

    
  

g.35255390 T>C

TCP11

    
  

g.4323852G>A

SPATA31E1

    
  

g.37453246G>C

NOTCH1

    
  1. Three classes of high-impact variants with corresponding single nucleotide polymorphism (SNP) identities (ID) and gene are given
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BMC Genomics

ISSN: 1471-2164

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