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Table 1 Statistical analysis of sequencing reads from the CK and MJ100 sRNA libraries in L. aurea

From: Identification and differential regulation of microRNAs in response to methyl jasmonate treatment in Lycoris aurea by deep sequencing

Category

CK1

CK2

CK3

MJ1

MJ2

MJ3

Total

Unique

Total

Unique

Total

Unique

Total

Unique

Total

Unique

Total

Unique

Clean reads

3,776,867

1,094,182

4,648,051

1,103,602

1,513,368

434,141

3,680,211

1,634,253

3,342,240

825,583

4,076,785

1,353,202

miRNA

149,287

402

200,761

408

59,857

322

118,396

318

134,827

389

158,220

385

rRNA

133,671

25,564

159,974

24,172

51,309

13,645

155,927

32,284

118,064

18,606

156,015

26,776

tRNA

69,481

10,396

101,905

10,616

31,025

5,776

102,000

15,393

57,567

7,849

84,561

12,534

snRNA

13,089

5,210

11,528

4,169

4,171

2,050

11,902

6,156

8,452

3,514

12,324

5,278

Cis-reg

6,266

2,201

8,348

2,110

2,740

961

7,908

3,629

6,507

1,594

7,601

2,757

repeats

113

99

86

73

37

37

320

286

69

58

174

151

gene

1,584,018 (42.94 %)

166,386 (15.21 %)

2,188,034 (47.07 %)

192,626 (17.45 %)

735,521 (48.60 %)

82,958 (19.11 %)

1,106,681 (30.07 %)

206,407 (12.63 %)

1,611,524 (48.22 %)

141,584 (17.15 %)

1,623,832 (39.83 %)

196,857 (14.55 %)

others

26,637

6,610

34,754

6,723

10,591

2,976

27,716

9,395

22,419

5,020

28,787

7,799

unannotated

1,794,305

877314

1,942,661

862,705

618,117

325,416

2,149,361

1,360,385

1,382,811

646,969

2,005,271

1,100,665