Category | CK1 | CK2 | CK3 | MJ1 | MJ2 | MJ3 | ||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Total | Unique | Total | Unique | Total | Unique | Total | Unique | Total | Unique | Total | Unique | |
Clean reads | 3,776,867 | 1,094,182 | 4,648,051 | 1,103,602 | 1,513,368 | 434,141 | 3,680,211 | 1,634,253 | 3,342,240 | 825,583 | 4,076,785 | 1,353,202 |
miRNA | 149,287 | 402 | 200,761 | 408 | 59,857 | 322 | 118,396 | 318 | 134,827 | 389 | 158,220 | 385 |
rRNA | 133,671 | 25,564 | 159,974 | 24,172 | 51,309 | 13,645 | 155,927 | 32,284 | 118,064 | 18,606 | 156,015 | 26,776 |
tRNA | 69,481 | 10,396 | 101,905 | 10,616 | 31,025 | 5,776 | 102,000 | 15,393 | 57,567 | 7,849 | 84,561 | 12,534 |
snRNA | 13,089 | 5,210 | 11,528 | 4,169 | 4,171 | 2,050 | 11,902 | 6,156 | 8,452 | 3,514 | 12,324 | 5,278 |
Cis-reg | 6,266 | 2,201 | 8,348 | 2,110 | 2,740 | 961 | 7,908 | 3,629 | 6,507 | 1,594 | 7,601 | 2,757 |
repeats | 113 | 99 | 86 | 73 | 37 | 37 | 320 | 286 | 69 | 58 | 174 | 151 |
gene | 1,584,018 (42.94Â %) | 166,386 (15.21Â %) | 2,188,034 (47.07Â %) | 192,626 (17.45Â %) | 735,521 (48.60Â %) | 82,958 (19.11Â %) | 1,106,681 (30.07Â %) | 206,407 (12.63Â %) | 1,611,524 (48.22Â %) | 141,584 (17.15Â %) | 1,623,832 (39.83Â %) | 196,857 (14.55Â %) |
others | 26,637 | 6,610 | 34,754 | 6,723 | 10,591 | 2,976 | 27,716 | 9,395 | 22,419 | 5,020 | 28,787 | 7,799 |
unannotated | 1,794,305 | 877314 | 1,942,661 | 862,705 | 618,117 | 325,416 | 2,149,361 | 1,360,385 | 1,382,811 | 646,969 | 2,005,271 | 1,100,665 |