From: BASE: a practical de novo assembler for large genomes using long NGS reads
SOAPdenovo2 | BASE | ||||||
---|---|---|---|---|---|---|---|
Wall time (h) | CPU time (h) | Max memory (GB) | Wall time (h) | CPU time (h) | Max memory (GB) | ||
YH, 100 bp, 36X | Index | 4 | 46 | 163 | 5 | 18 | 200 |
Contig | 2 | 2 | 41 | 4 | 53 | 140 | |
Total | 6 | 48 | 163 | 9 | 71 | 200 | |
YH, 150 bp, 64X | Index | 6 | 75 | 201 | 11 | 36 | 192 |
Contig | 1 | 1 | 33 | 5 | 80 | 225 | |
Total | 7 | 76 | 201 | 16 | 116 | 225 | |
NA12878D, 150 bp | Index | 9 | 141 | 477 | 9 | 34 | 194 |
Contig | 1 | 1 | 24 | 7 | 144 | 142 | |
Total | 10 | 141 | 477 | 16 | 178 | 194 |