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Table 2 Motifs for binding sites searching

From: Disrupted cooperation between transcription factors across diverse cancer types

Motif

Matrix_acca

IRF2

IRF5

IRF6

IRF8

5′-RAAANTGAAAN-3′

M00972

✔

✔

 

✔

5′-BNCRSTTTCANTTYY-3′

M00772

✔

✔

✔

✔

5′-GAAAAGYGAAASY-3′

M00063

✔

   

5′-RAARTGAAACTG-3′

M00699

   

✔

  1. aMatrix_acc means the accession number of matrix in TRANSFAC
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BMC Genomics

ISSN: 1471-2164

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