Table 3 Locations of genes with GGDEF/GGEEF domains in the P. priestleyi BC1401 draft genome and similarity of the gene product to WspR based upon modelling of protein structure in Phyre2 [45]
BC1401 gene | Gene Product Name | Length (aa) | Confidence | %ID | Alignment length |
|---|---|---|---|---|---|
Ga0079976_102110 | Response regulator receiver modulated diguanylate cyclasea | 331 | 100Â % | 38Â % | 93Â % |
Ga0079976_106215 | Response regulator receiver modulated diguanylate cyclasea | 312 | 100Â % | 39Â % | 97Â % |
Ga0079976_102431 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase | 595 | 100Â % | 27Â % | 50Â % |
Ga0079976_101496 | Response regulator receiver modulated diguanylate cyclase/phosphodiesterase | 613 | 100Â % | 27Â % | 51Â % |
Ga0079976_10199 | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein | 725 | 100Â % | 29Â % | 23Â % |
Ga0079976_10297 | Diguanylate cyclase (GGDEF) domain-containing protein | 530 | 100Â % | 34Â % | 21Â % |
Ga0079976_101051 | PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein | 732 | 100Â % | 34Â % | 22Â % |