Table 2 Distribution of non-ref TEs classes between accumulated TEs and non-ref TEs
From: Genome-wide characterization of non-reference transposons in crops suggests non-random insertion
Class | O. sativa | Z. mays | S. bicolor | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Accumulated TEs | Non-ref TEs | Accumulated TEs | Non-ref TEs | Accumulated TEs | Non-ref TEs | |||||||
No. | % | No. | % | No. | % | No. | % | No. | % | No. | % | |
DNAa | 198156 | 66.98 | 7338 | 56.17 | 199637 | 16.30 | 7846 | 32.85 | 215449 | 44.53 | 26270 | 73.63 |
LINE | 6274 | 2.12 | 43 | 0.33 | 24248 | 1.98 | 939 | 3.93 | 19208 | 3.97 | 271 | 0.76 |
LTR | 69280 | 23.42 | 5472 | 41.88 | 960319 | 78.41 | 14495 | 60.69 | 235461 | 48.66 | 8863 | 24.84 |
RC | 11941 | 4.04 | 83 | 0.64 | 37870 | 3.09 | 602 | 2.52 | 10395 | 2.15 | 204 | 0.57 |
SINE | 9678 | 3.27 | 84 | 0.01 | 2686 | 0.22 | 3 | 0.01 | 3347 | 0.69 | 70 | 0.20 |