Table 1 Selective sweeps. FST and heterozygosity estimations in sliding windows were used to identify differentiated loci undergoing selection in either northern or southern populations of Atlantic salmon in Norway. Genes carrying differentiated missense mutations are shown in bold
Chromosome | Chromosomal region | Sweep length (bp) | Genes in selective sweeps |
|---|---|---|---|
5 | 22,475,000 – 22,800,000 | 325,000 | tnmd, elf1, nkrf , sept6, sowahc , rpl39, upf3b, nkap , zbtb33 , atp1b4, lamp2, cul4b, mcts1, c1galt1c1, clic2 |
10 | 76,250,000 – 76,450,000 | 200,000 | sept7, anln , prmt7, coq9, polr2c, dgat1, nedd4, adat1, spire2 |
11 | 19,225,000 – 19,300,000 | 75,000 | numa1 |
13 | 78,325,000 – 78,425,000 | 100,000 | trpc2 , rrm1 , slc6a7, rb1 , lpar6 |
13 | 81,025,000 – 81,150,000 | 125,000 | eda2r, ar, ophn1 |
14 | 64,700,000 – 65,275,000 | 575,000 | pard6g, bloc1s4, nutf2, adnp2 , txnl4a, pqlc1, kcng2, ctdp1, adck5, cpsf1 , parp10 , st3gal1, khdrbs3 |
15 | 46,925,000 – 47,200,000 | 275,000 | mdga1 |
21 | 24,850,000 – 25,075,000 | 225,000 | trim13, rnaseh2b , nr0b1, il1rapl1 |
24 | 34,225,000 – 34,525,000 | 300,000 | edil3 |
25 | 47,075,000 – 47,225,000 | 150,000 | stxbp5l, gtf2e1, mx1-1 , mx1-2 , mx2-1 , smcp-1a, mx1-3 |