Identification of favorable SNP alleles and candidate genes for traits related to early maturity via GWAS in upland cotton

Table 1 SNP distribution on each chromosome

Chromosome	SNP number	Chromosome length (Mb)	SNP density^a (kb)	Chromosome	SNP number	Chromosome length (Mb)	SNP density^a (kb)
A_t1	4553	106.99	23.50	D_t1	5882	117.24	19.93
A_t2	2890	61.75	21.37	D_t2	2801	50.19	17.92
A_t3	2769	100.35	36.24	D_t3	1464	42.80	29.23
A_t4	4207	92.29	21.94	D_t4	2166	37.36	17.25
A_t5	3688	102.56	27.81	D_t5	3903	65.57	16.80
A_t6	2721	56.48	20.76	D_t6	2378	44.80	18.84
A_t7	1006	23.27	23.13	D_t7	1480	47.98	32.42
A_t8	2540	78.75	31.00	D_t8	3611	56.89	15.76
A_t9	4268	91.12	21.35	D_t9	3774	70.91	18.79
A_t10	4877	95.48	19.58	D_t10	3026	57.80	19.10
A_t11	4032	102.02	25.30	D_t11	2567	61.12	23.81
A_t12	2564	79.16	30.87	D_t12	1658	39.38	23.75
A_t13	4456	91.55	20.55	D_t13	2394	55.87	23.34

^aSNP density is presented as the average physical distance between two adjacent SNP loci

ISSN: 1471-2164