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Table 7 Differentially expressed proteins in normal and abnormal embryos in cross C. morifolium × tetraploid C. nankingense

From: Chromosome doubling to overcome the chrysanthemum cross barrier based on insight from transcriptomic and proteomic analyses

Gene ID in transcriptome

Annotation in transcriptome

Annotation in proteome

Protein abundance

Accession

Peptides (95 %)

Species

NE18:NE12

AE18:NE12

NE18:AE18

CL11142.Contig2

acetoacetyl CoA thiolase

acetoacetyl CoA thiolase

1.54

1.22

1.25

gi|34597334

4

Helianthus annuus

CL12806.Contig2

GDP-mannose 3,5-epimerase 1 isoform 1

GDP-mannose 3’,5’-epimerase

0.76

0.54

1.42

gi|240248436

3

Solanum pennellii

CL12806.Contig2

GDP-mannose 3,5-epimerase 1 isoform 1

predicted protein

0.63

0.66

0.95

gi|224130650

3

Populus trichocarpa

CL13159.Contig2

ruBisCO large subunit-binding protein subunit alpha

hypothetical protein

0.77

0.51

1.51

gi|242032147

4

Sorghum bicolor

CL15574.Contig2

pyruvate kinase, cytosolic isozyme-like

Pyruvate kinase

1.57

0.69

2.26

gi|92870921

3

Medicago truncatula

CL2359.Contig5

putative isopropylmalate synthase

putative isopropylmalate synthase

1.26

1.52

0.82

gi|193290704

2

Capsicum annuum

CL4538.Contig4

glyceraldehyde 3-phosphate dehydrogenase

glyceraldehyde-3-phosphate dehydrogenase

1.48

1.64

0.90

gi|83701234

5

Talipariti tiliaceum

CL4750.Contig2

predicted protein

hypothetical protein

1.86

0.91

2.04

gi|242074456

2

Sorghum bicolor

CL4761.Contig1

photosystem II cp47 protein

photosystem II 47 kDa protein

1.53

1.38

1.11

gi|75755685

4

Acorus calamus

CL480.Contig6

Transitional endoplasmic reticulum ATPase

predicted protein

1.12

0.43

2.62

gi|326527541

6

Hordeum vulgare subsp. vulgare

CL4814.Contig3

unknown

unnamed protein product

0.65

0.87

0.75

gi|257674447

4

Helianthus annuus

CL5465.Contig4

elongation factor 1-gamma-like

hypothetical protein

1.51

1.56

0.97

gi|225465198

4

Vitis vinifera

CL7034.Contig6

putative UDP-glucose dehydrogenase 1

hypothetical protein

0.81

1.54

0.53

gi|302779800

3

Selaginella moellendorffii

CL8744.Contig1

14-3-3-like protein

14-3-3 protein 6

1.19

1.62

0.73

gi|26454608

7

SOLLC

Unigene11968

thiazole biosynthetic enzyme

unknown

0.86

0.63

1.36

gi|116784521

3

Picea sitchensis

Unigene12985

thioredoxin peroxidase

peroxiredoxin

1.53

1.04

1.47

gi|300078580

2

Jatropha curcas

Unigene15015

Nucleoside diphosphate kinase

cytosolic nucleoside diphosphate kinase

1.52

0.81

1.87

gi|73808794

4

Solanum chacoense

Unigene16290

calcium-dependent protein kinase 1

unnamed protein product

0.58

0.57

1.02

gi|257734686

2

Solanum lycopersicum

Unigene23495

serine carboxypeptidase precursor

putative serine carboxypeptidase precursor

1.74

1.13

1.54

gi|18447763

5

Gossypium hirsutum

Unigene30534

sucrose sucrose 1-fructosyltransferase

sucrose:sucrose 1-fructosyltransferase

0.59

0.64

0.92

gi|162424641

5

Lactuca sativa

Unigene45009

tubulin beta chain, putative

tubulin beta-9 chain

0.81

0.61

1.32

gi|7268885

12

Arabidopsis thaliana

Unigene7304

malate dehydrogenase, mitochondrial-like

malate dehydrogenase

1.64

1.52

1.08

gi|7798706

5

Vitis vinifera

Unigene8567

conserved hypothetical protein

predicted protein

1.90

2.83

0.67

gi|224138258

2

Populus trichocarpa