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Table 1 Genome statistics of completely sequenced A. baumannii strains

From: Pangenome and immuno-proteomics analysis of Acinetobacter baumannii strains revealed the core peptide vaccine targets

Pan- and Comparative Genomics of Acinetobacter baumannii

#

Organism (Strain)

Chromosome/Plasmid

Size (Mb)

GC%

Genes/Proteins

Genes Predicted

New Genes

New Families

Pan-Genome

Core-Genome

1

A. baumannii BJAB07104

NC_021726.1/p1BJAB07104:NC_021727.1;p2BJAB07104:NC_021728.1

4. 0

38.95

3878/3754

3822

3822

3597

3597

3597

2

A. baumannii MDR-TJ

NC_017847.1/pABTJ1:NC_017848.1;pABTJ2:NC_020524.1

4.153

39.07

4014/3890

3956

286

268

3862

3454

3

A. baumannii MDR-ZJ06

NC_017171.1/pMDR-ZJ06:NC_017172.1

4.011

39.04

3847/3711

3799

129

123

3984

3272

4

A. baumann;ii TYTH-1

NC_018706.1

3.957

39.00

3754/3628

3697

76

76

4057

3176

5

A. baumannii AC30

CP007577.1/pAC30a:CP007578.1;pAC30b:CP007579.1; pAC30c:CP007580.1

3.922

38.82

3729/3660

3733

155

147

4203

3145

6

A. baumannii BJAB0715

NC_021733.1/pBJAB0715:NC_021734.1

4.053

38.91

3897/3756

3845

377

359

4560

2940

7

A. baumannii BJAB0868

NC_021729.1/p1BJAB0868:NC_021730.1; p2BJAB0868:NC_021731.1;p3BJAB0868:NC_021732.1

4.005

38.93

3820/3689

3762

55

55

4610

2899

8

A. baumannii ZW85-1

NC_023028.1/ZW85p2:NC_023031.1;pAbNDM-1:NC_019985.2

3.925

39.20

3684/3553

3625

237

234

4836

2847

9

A. baumannii AC29

NZ_CP007535.2

3.851

39.00

3659/3581

3613

11

10

4842

2834

10

A. baumannii AB031

NZ_CP009256.1

3.803

39.20

3595/3472

3521

241

224

5060

2754

11

A. baumannii AB030

NZ_CP009257.1

4.335

39.00

4336/4155

4285

549

334

5387

2715

12

A. baumannii Abh12 OA2

NZ_CP009534.1

3.875

39.10

3674/3563

3609

74

73

5454

2700

13

A. baumannii LAC-4

NZ_CP007712.1/pABLAC1:NZ_CP007713.1;pABLAC2:NZ_CP007714.1

3.968

38.98

3821/3683

3768

194

194

5640

2645

14

A. baumannii 6411

NZ_CP010368.1/p6411-66.409 kb:NZ_CP010903.1;p6411-89.111 kb:NZ_CP010369.1;p6411-9.012 kb:NZ_CP010370.2

4.061

38.75

3840/3686

3780

408

403

6038

2580

15

A. baumannii 6200

NZ_CP010397.1/p6200-114.848 kb:NZ_CP010398.1;p6200-47.274 kb:NZ_CP010399.1; p6200-9.327 kb:NZ_CP010400.1

4.073

39.18

3876/3762

3823

193

193

6230

2541

16

A. baumannii NCGM 237

NZ_AP013357.1

4.021

39.10

3894/3783

3838

93

93

6319

2527

17

A. baumannii IOMTU433

NZ_AP014649.1/pIOMTU433:NZ_AP014650.1

4.190

39.11

3999/3894

3926

242

237

6553

2527

18

A. baumannii A1

NZ_CP010781.1/pA1-1:NZ_CP010782.1

3.917

39.28

3735/3634

3650

140

134

6684

2513

19

A. baumannii AB5075-UW

NZ_CP008706.1/p1AB5075:NZ_CP008707.1/p2AB5075:NZ_CP008708.1; p3AB5075:NZ_CP008709.1

4.066

39.04

3929/3827

3867

89

70

6751

2511

20

A. baumannii XH386

NZ_CP010779.1/pAB386:NZ_CP010780.1

4.199

39.16

4062/3961

3991

27

27

6778

2511

21

A. baumannii Ab04- MFF

NZ_CP012006.1/pAB04-1:NZ_CP012007.1/pAB04-2:NZ_CP012008.1

4.192

38.91

4067/3944

4009

84

82

6856

2505

22

A. baumannii ACICU

NC_010611.1/pACICU1:NC_010605.1;pACICU2:NC_010606.1

3.996

38.90

3802/3613

3782

80

80

6927

2496

23

A. baumannii AtCC MFF

NZ_CP012004.1/pAB3:NZ_CP012005.1

4.006

38.94

3797/3688

3729

145

143

7066

2485

24

A. baumannii AB307-0294

NC_011595.1

3.760

39.00

3511/3363

3467

67

67

7127

2482

25

A.baumannii AB0057

NC_011586.1/pAB0057:NC_011585.1

4.059

39.18

3890/3669

3879

104

101

7218

2473

26

A. baumannii AYE

NC_010410.1/p1ABAYE:NC_010401.1; p2ABAYE:NC_010402.1; p3ABAYE:NC_010404.1; p4ABAYE:NC_010403.1

4.048

39.33

3878/3725

3795

54

48

7262

2473

27

A. baumannii D1279779

NC_020547.2/pD1279779:NC_020525.1

3.711

38.98

3523/3381

3473

88

87

7341

2459

28

A. baumannii 1656-2

NC_017162.1/ABKp1:NC_017163.1;ABKp2:NC_017164.1

4.023

39.08

3882/3733

3837

51

48

7385

2459

29

A. baumannii TCDC-AB0715

CP002522.2/p1ABTCDC0715;p2ABTCDC0715

4.218

38.89

4010/3956

4054

37

32

7408

2458

30

A.baumannii ATCC 17978

NC_009085.1/pAB1:NC_009083.1; pAB2:NC_009084.1

4.001

38.88

3469/3367

3951

212

210

7606

2445

  1. NCBI database was accessed to retrieve the chromosomal and plasmid sequences of the included strains. Genome size, GC content, number of genes and proteins contained in an isolate were estimated. Genes/proteins in all the included strains were predicted by using Prodigal. Comparative genomics approaches were employed to estimate the pan- and core genome, new genes and gene families among the strains. The number of genes and proteins were compared, and also the size of the pan and core along with strain specific gene families are identified