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Table 1 Main characteristics of Trinity de novo transcriptome assembly

From: Global transcriptional analysis suggests Lasiodiplodia theobromae pathogenicity factors involved in modulation of grapevine defensive response

Parameters

All transcript

Only longest Isoform

Number of contigs

29621

19860

Contig N10

6773

5525

Contig N20

5345

4321

Contig N30

4365

3572

Contig N40

3667

2971

Contig N50

3135

2472

Median contig length

1242

658

Average contig

1798.4

1310.58

Total assembled bases

53270493

27680863