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Table 2 LincRNA transcripts highly coexpressed with defence-related CDS genes

From: Genome-wide identification of potato long intergenic noncoding RNAs responsive to Pectobacterium carotovorum subspecies brasiliense infection

LincRNA ID LincRNA class r rho a Potato gene ID Arabidopsis ortholog Gene description Gene Ontology classification (Biological process)
LincRNA739 Intergenic 1 PGSC0003DMG400014801 AT4G17760 rad1-like response to stimulus (GO:0050896) response to stress (GO:0006950)
LincRNA1304 Intergenic 1 PGSC0003DMG400020345 AT2G38080 Laccase-4 response to stimulus (GO:0050896) response to toxic substance (GO:0009636)
LincRNA127 Intergenic 1 PGSC0003DMG400011631 AT3G46230 17.4 kDa class I heat shock protein (HSP17.4A) response to stimulus (GO:0050896) response to stress (GO:0006950)
LincRNA803 Intergenic 1   AT1G53540 17.6 kDa class I heat shock protein 3 (HSP17.6C) response to stimulus (GO:0050896) response to stress (GO:0006950)
LincRNA127 Intergenic 1 PGSC0003DMG400000996 AT3G47570 Probable LRR receptor-like serine/threonine-protein kinase response to stimulus (GO:0050896) defence response to bacterium (GO:0042742)
     AT3G47580 Leucine-rich repeat protein kinase family protein   
     AT3G47090 Leucine-rich repeat protein kinase-like protein   
LincRNA1464 Intergenic 1 PGSC0003DMG400012994 AT5G21950 Hydrolase, alpha/beta fold family protein response to stimulus (GO:0050896) response to toxic substance (GO:0009636)
     AT4G33180    
LincRNA907 Intergenic 1 PGSC0003DMG400000757 AT2G23620 Methylesterase 1 response to stimulus (GO:0050896) response to toxic substance (GO:0009636)
LincRNA1118 Intergenic 0.9      
LincRNA258 Intergenic 0.9      
LincRNA632 Intergenic 1 PGSC0003DMG400025635 AT3G45920 Protein kinase family protein   defence response to bacterium (GO:0042742)
    PGSC0003DMG400004885 AT2G24370 Adenine nucleotide alpha hydrolase domain-containing protein kinase   defence response to bacterium (GO:0042742)
LincRNA758 Intergenic 1      
LincRNA749 Intergenic 1      
     AT4G09570 Calcium-dependent protein kinase 4   response to endogenous stimulus (GO:0009719)
    PGSC0003DMG400026077 AT1G35670 Calcium-dependent protein kinase 11   
LincRNA758 Intergenic 1      
LincRNA749 Intergenic 1      
    PGSC0003DMG400013679 AT1G30270 CBL-interacting serine/threonine-protein kinase 23 response to stimulus (GO:0050896)  
LincRNA1112 Intergenic 1      
LincRNA908 Intergenic 0.9      
LincRNA1712 Intergenic 0.9      
    PGSC0003DMG400030755 AT1G77110 Probable auxin efflux carrier component 6 response to stimulus (GO:0050896) response to endogenous stimulus (GO:0009719)
LincRNA178 Intergenic 0.9      
LincRNA1583 Intergenic 1      
    PGSC0003DMG400021008 AT4G20940 Probable LRR receptor-like serine/threonine-protein kinase response to stimulus (GO:0050896) defense response to bacterium (GO:0042742)
LincRNA379 Intergenic 0.9      
  1. aSpearman correlation coefficient