Table 1 Characteristic features of AP2/ERF Transcription factor gene family identified in B. distachyon
Gene Name | Ggene id | Physical position | Properties of AP2/ERF proteins | Subcell location | EST valadation | ||||
|---|---|---|---|---|---|---|---|---|---|
Chrom no | Start position (bp) | End Position (bp) | Protein length (aa) | pI | Molecular weight (Da) | ||||
BdAP2/ERF001 | Bradi1g00670 | 1 | 521659 | 522548 | 192 | 8.13 | 20.2498 | Nuclear | 17 |
BdAP2/ERF002 | Bradi1g03880 | 1 | 2601482 | 2604919 | 451 | 7.23 | 48.97473 | Nuclear | 6 |
BdAP2/ERF003 | Bradi1g04110 | 1 | 2788453 | 2789893 | 302 | 10.05 | 32.70946 | Nuclear | 31 |
BdAP2/ERF004 | Bradi1g07290 | 1 | 5105505 | 5109153 | 635 | 6.54 | 67.00742 | Nuclear | - |
BdAP2/ERF005 | Bradi1g18580 | 1 | 14895085 | 14896008 | 308 | 6.13 | 32.25646 | Nuclear | 8 |
BdAP2/ERF006 | Bradi1g18870 | 1 | 15104782 | 15107266 | 260 | 9.9 | 27.76687 | Mitochondrial | - |
BdAP2/ERF007 | Bradi1g23756 | 1 | 19130000 | 19131273 | 299 | 9.05 | 32.04507 | Nuclear | 5 |
BdAP2/ERF008 | Bradi1g30337 | 1 | 25719025 | 25721056 | 379 | 9.07 | 40.85655 | Nuclear | 1 |
BdAP2/ERF009 | Bradi1g31337 | 1 | 26832687 | 26835421 | 467 | 5.81 | 50.91159 | Nuclear | 2 |
BdAP2/ERF010 | Bradi1g33550 | 1 | 29119163 | 29120322 | 189 | 5.17 | 20.18015 | Nuclear | 2 |
BdAP2/ERF011 | Bradi1g35400 | 1 | 30927335 | 30927973 | 213 | 9.16 | 22.94622 | Chloroplast | - |
BdAP2/ERF012 | Bradi1g35410 | 1 | 30934707 | 30935330 | 208 | 8.33 | 22.09309 | Nuclear | - |
BdAP2/ERF013 | Bradi1g35420 | 1 | 30939140 | 30939700 | 187 | 5.11 | 20.32711 | Cytoplasmic | - |
BdAP2/ERF014 | Bradi1g36590 | 1 | 32262325 | 32263730 | 226 | 9.3 | 23.87795 | Nuclear | - |
BdAP2/ERF015 | Bradi1g38110 | 1 | 34253209 | 34254003 | 265 | 4.85 | 27.79697 | Chloroplast | 1 |
BdAP2/ERF016 | Bradi1g45470 | 1 | 43685130 | 43686821 | 352 | 7.79 | 37.90218 | Nuclear | 7 |
BdAP2/ERF017 | Bradi1g46120 | 1 | 44406118 | 44407133 | 236 | 4.62 | 24.42913 | Chloroplast | 2 |
BdAP2/ERF018 | Bradi1g46690 | 1 | 45270114 | 45272465 | 352 | 4.78 | 38.51971 | Nuclear | 53 |
BdAP2/ERF019 | Bradi1g47480 | 1 | 46027554 | 46028362 | 154 | 6.97 | 16.7786 | Nuclear | 5 |
BdAP2/ERF020 | Bradi1g48320 | 1 | 46956726 | 46957256 | 177 | 9.99 | 18.74815 | Nuclear | 23 |
BdAP2/ERF021 | Bradi1g49560 | 1 | 48258020 | 48259205 | 221 | 5.32 | 23.59387 | Nuclear | 5 |
BdAP2/ERF022 | Bradi1g49570 | 1 | 48261395 | 48262309 | 225 | 5.62 | 23.88046 | Nuclear | 8 |
BdAP2/ERF023 | Bradi1g53650 | 1 | 51957465 | 51961449 | 415 | 6.14 | 45.29458 | Nuclear | 9 |
BdAP2/ERF024 | Bradi1g54450 | 1 | 52809017 | 52809787 | 257 | 9.32 | 27.56207 | Nuclear | 3 |
BdAP2/ERF025 | Bradi1g57560 | 1 | 56305875 | 56308647 | 605 | 7.17 | 63.09426 | Nuclear | - |
BdAP2/ERF026 | Bradi1g57970 | 1 | 56789254 | 56789982 | 243 | 4.7 | 26.05227 | Chloroplast | 9 |
BdAP2/ERF027 | Bradi1g64240 | 1 | 63443708 | 63448081 | 395 | 9.09 | 42.75122 | Nuclear | - |
BdAP2/ERF028 | Bradi1g67350 | 1 | 65990605 | 65991651 | 247 | 5.25 | 25.45989 | Nuclear | 4 |
BdAP2/ERF029 | Bradi1g69207 | 1 | 67693295 | 67697013 | 628 | 6.98 | 67.31695 | Nuclear | 2 |
BdAP2/ERF030 | Bradi1g71740 | 1 | 69679681 | 69681013 | 288 | 6.17 | 31.22614 | Nuclear | 7 |
BdAP2/ERF031 | Bradi1g72450 | 1 | 70182711 | 70183727 | 339 | 4.78 | 35.80922 | Nuclear | 63 |
BdAP2/ERF032 | Bradi1g72457 | 1 | 70186902 | 70188241 | 308 | 5.82 | 32.56157 | Chloroplast | 10 |
BdAP2/ERF033 | Bradi1g72890 | 1 | 70503793 | 70507456 | 526 | 7.82 | 55.3123 | Nuclear | 10 |
BdAP2/ERF034 | Bradi1g72990 | 1 | 70580747 | 70581774 | 331 | 6.41 | 34.74665 | Nuclear | 4 |
BdAP2/ERF035 | Bradi1g75040 | 1 | 72026796 | 72027191 | 132 | 6.61 | 14.16364 | Nuclear | 7 |
BdAP2/ERF036 | Bradi1g77120 | 1 | 73494001 | 73494771 | 257 | 5.43 | 27.522 | Chloroplast | 8 |
BdAP2/ERF037 | Bradi2g02100 | 2 | 1434535 | 1436793 | 337 | 4.77 | 36.11855 | Nuclear | 14 |
BdAP2/ERF038 | Bradi2g02710 | 2 | 1905801 | 1907344 | 364 | 7.16 | 39.28463 | Nuclear | 17 |
BdAP2/ERF039 | Bradi2g02720 | 2 | 1921269 | 1922752 | 365 | 9.96 | 38.9569 | Chloroplast | 14 |
BdAP2/ERF040 | Bradi2g04000 | 2 | 2818870 | 2820722 | 280 | 5.97 | 30.81911 | Nuclear | 1 |
BdAP2/ERF041 | Bradi2g06180 | 2 | 4632942 | 4633697 | 252 | 4.8 | 26.7444 | Nuclear | - |
BdAP2/ERF042 | Bradi2g07357 | 2 | 5714188 | 5715258 | 357 | 4.85 | 38.60973 | Nuclear | 9 |
BdAP2/ERF043 | Bradi2g09434 | 2 | 7714796 | 7719951 | 1338 | 5.98 | 148.56946 | Nuclear | 2 |
BdAP2/ERF044 | Bradi2g11890 | 2 | 10206158 | 10207184 | 198 | 6.19 | 21.45306 | Nuclear | 57 |
BdAP2/ERF045 | Bradi2g15847 | 2 | 14025073 | 14025927 | 285 | 9.51 | 30.25695 | Nuclear | 7 |
BdAP2/ERF046 | Bradi2g17610 | 2 | 15668356 | 15669979 | 409 | 9.64 | 43.71991 | Nuclear | 29 |
BdAP2/ERF047 | Bradi2g18570 | 2 | 16501499 | 16503701 | 454 | 8.62 | 48.82772 | Chloroplast | - |
BdAP2/ERF048 | Bradi2g21060 | 2 | 18434490 | 18435619 | 237 | 8.87 | 23.84977 | Nuclear | 19 |
BdAP2/ERF049 | Bradi2g21067 | 2 | 18444903 | 18445651 | 196 | 10.25 | 20.59425 | Nuclear | 4 |
BdAP2/ERF050 | Bradi2g24170 | 2 | 22011630 | 22012545 | 228 | 6.51 | 23.49464 | Nuclear | 15 |
BdAP2/ERF051 | Bradi2g25050 | 2 | 22846421 | 22847117 | 180 | 9.63 | 19.10829 | Nuclear | - |
BdAP2/ERF052 | Bradi2g26987 | 2 | 25743726 | 25748213 | 394 | 7.6 | 43.00918 | Chloroplast | - |
BdAP2/ERF053 | Bradi2g27920 | 2 | 26951955 | 26953071 | 169 | 6.63 | 17.67988 | Chloroplast | 10 |
BdAP2/ERF054 | Bradi2g29960 | 2 | 29508803 | 29511680 | 382 | 5 | 41.65054 | Nuclear | 15 |
BdAP2/ERF055 | Bradi2g31480 | 2 | 31231590 | 31233055 | 272 | 8.54 | 29.35912 | Nuclear | 5 |
BdAP2/ERF056 | Bradi2g37800 | 2 | 38179562 | 38184091 | 494 | 6.48 | 53.7679 | Nuclear | 12 |
BdAP2/ERF057 | Bradi2g45530 | 2 | 45915509 | 45916627 | 301 | 4.44 | 31.9448 | Nuclear | 9 |
BdAP2/ERF058 | Bradi2g47220 | 2 | 47558425 | 47559938 | 404 | 9.4 | 42.57902 | Chloroplast | 32 |
BdAP2/ERF059 | Bradi2g48130 | 2 | 48444901 | 48447985 | 349 | 9.12 | 39.41296 | Mitochondrial | - |
BdAP2/ERF060 | Bradi2g52370 | 2 | 51766250 | 51767401 | 244 | 9.57 | 25.15542 | Nuclear | 9 |
BdAP2/ERF061 | Bradi2g52380 | 2 | 51772580 | 51773238 | 172 | 10.25 | 18.47806 | Nuclear | - |
BdAP2/ERF062 | Bradi2g53070 | 2 | 52290848 | 52293688 | 436 | 8.91 | 47.4695 | Nuclear | - |
BdAP2/ERF063 | Bradi2g56140 | 2 | 54552519 | 54554079 | 252 | 7.28 | 26.8432 | Nuclear | 19 |
BdAP2/ERF064 | Bradi2g57200 | 2 | 55409637 | 55410303 | 147 | 6.61 | 15.52733 | Nuclear | 6 |
BdAP2/ERF065 | Bradi2g57747 | 2 | 55829067 | 55832804 | 628 | 6.17 | 66.83063 | Nuclear | 1 |
BdAP2/ERF066 | Bradi2g60331 | 2 | 57699689 | 57700420 | 244 | 5.18 | 25.33294 | PlasmaMembrane | 18 |
BdAP2/ERF067 | Bradi2g60340 | 2 | 57707368 | 57708090 | 241 | 4.9 | 25.10965 | Chloroplast | 21 |
BdAP2/ERF068 | Bradi2g61630 | 2 | 58640558 | 58642834 | 331 | 11.63 | 35.95634 | Nuclear | 17 |
BdAP2/ERF069 | Bradi3g04370 | 3 | 2981846 | 2982121 | 92 | 10.92 | 9.77404 | Nuclear | - |
BdAP2/ERF070 | Bradi3g04380 | 3 | 2988281 | 2989361 | 118 | 9.69 | 12.80229 | Nuclear | - |
BdAP2/ERF071 | Bradi3g04410 | 3 | 3030811 | 3031468 | 194 | 6.58 | 19.75096 | Nuclear | 9 |
BdAP2/ERF072 | Bradi3g06562 | 3 | 4743747 | 4744779 | 195 | 5.32 | 20.50215 | Nuclear | 3 |
BdAP2/ERF073 | Bradi3g07450 | 3 | 5592374 | 5593517 | 212 | 9.07 | 22.84071 | Nuclear | 20 |
BdAP2/ERF074 | Bradi3g08790 | 3 | 6915336 | 6916085 | 250 | 5.5 | 26.42149 | Nuclear | 2 |
BdAP2/ERF075 | Bradi3g12565 | 3 | 11243949 | 11244320 | 124 | 8.85 | 13.81715 | Nuclear | 14 |
BdAP2/ERF076 | Bradi3g12680 | 3 | 11374939 | 11375580 | 214 | 8.74 | 22.85931 | Nuclear | - |
BdAP2/ERF077 | Bradi3g15880 | 3 | 14106918 | 14109546 | 288 | 5.41 | 31.29551 | Nuclear | 2 |
BdAP2/ERF078 | Bradi3g18070 | 3 | 16466074 | 16466826 | 171 | 10.58 | 17.59787 | Nuclear | 8 |
BdAP2/ERF079 | Bradi3g24000 | 3 | 23546847 | 23547533 | 229 | 8.73 | 24.80911 | Nuclear | 4 |
BdAP2/ERF080 | Bradi3g27690 | 3 | 28745318 | 28745683 | 122 | 5.57 | 12.79902 | Cytoplasmic | 2 |
BdAP2/ERF081 | Bradi3g31600 | 3 | 33875837 | 33876445 | 203 | 5.26 | 21.76436 | Chloroplast | 8 |
BdAP2/ERF082 | Bradi3g33355 | 3 | 35731449 | 35732636 | 264 | 4.9 | 27.94319 | Nuclear | 3 |
BdAP2/ERF083 | Bradi3g33670 | 3 | 36046660 | 36047028 | 123 | 10.08 | 13.23904 | Nuclear | - |
BdAP2/ERF084 | Bradi3g35560 | 3 | 37854781 | 37856423 | 275 | 9.46 | 29.16776 | Nuclear | 38 |
BdAP2/ERF085 | Bradi3g36820 | 3 | 39192052 | 39195892 | 376 | 7.09 | 41.41683 | Nuclear | - |
BdAP2/ERF086 | Bradi3g37544 | 3 | 40042914 | 40043558 | 215 | 4.89 | 22.74426 | Nuclear | - |
BdAP2/ERF087 | Bradi3g38140 | 3 | 40608825 | 40610019 | 280 | 5.69 | 30.34868 | Nuclear | 24 |
BdAP2/ERF088 | Bradi3g41543 | 3 | 43477691 | 43479816 | 236 | 6.71 | 25.05387 | Nuclear | 4 |
BdAP2/ERF089 | Bradi3g41546 | 3 | 43481400 | 43482857 | 234 | 8.44 | 24.97712 | Chloroplast | - |
BdAP2/ERF090 | Bradi3g42627 | 3 | 44115159 | 44119544 | 487 | 8.75 | 53.34822 | Chloroplast | - |
BdAP2/ERF091 | Bradi3g43822 | 3 | 45506144 | 45512571 | 276 | 9.2 | 31.0089 | Nuclear | 21 |
BdAP2/ERF092 | Bradi3g44470 | 3 | 46345345 | 46346091 | 249 | 5.07 | 26.56773 | Nuclear | 13 |
BdAP2/ERF093 | Bradi3g45997 | 3 | 47939264 | 47939779 | 172 | 5.2 | 18.7198 | Nuclear | - |
BdAP2/ERF094 | Bradi3g47610 | 3 | 49227063 | 49228217 | 308 | 6.97 | 32.78146 | Nuclear | 1 |
BdAP2/ERF095 | Bradi3g48697 | 3 | 50080298 | 50084464 | 690 | 6.11 | 73.30758 | Nuclear | - |
BdAP2/ERF096 | Bradi3g49810 | 3 | 51052812 | 51054767 | 437 | 5.72 | 47.32396 | Nuclear | 22 |
BdAP2/ERF097 | Bradi3g50490 | 3 | 51687040 | 51688418 | 297 | 6.32 | 30.96065 | Nuclear | 24 |
BdAP2/ERF098 | Bradi3g50620 | 3 | 51763593 | 51764381 | 263 | 5.44 | 27.54566 | Nuclear | 2 |
BdAP2/ERF099 | Bradi3g50630 | 3 | 51784618 | 51785497 | 238 | 5.35 | 24.99462 | Nuclear | 7 |
BdAP2/ERF100 | Bradi3g51610 | 3 | 52662982 | 52664420 | 286 | 4.77 | 29.4364 | Nuclear | - |
BdAP2/ERF101 | Bradi3g51630 | 3 | 52685121 | 52686098 | 228 | 5.87 | 24.17896 | Nuclear | 5 |
BdAP2/ERF102 | Bradi3g54160 | 3 | 54676859 | 54677475 | 169 | 8.8 | 18.11231 | Nuclear | 6 |
BdAP2/ERF103 | Bradi3g57360 | 3 | 57003839 | 57004549 | 237 | 5.39 | 25.75201 | Chloroplast | 5 |
BdAP2/ERF104 | Bradi3g57867 | 3 | 57514740 | 57522455 | 545 | 6.05 | 58.32911 | Chloroplast | 49 |
BdAP2/ERF105 | Bradi3g58015 | 3 | 57607422 | 57608473 | 259 | 5.54 | 27.34452 | Extracellular | 9 |
BdAP2/ERF106 | Bradi3g58980 | 3 | 58281872 | 58283733 | 316 | 7.02 | 33.64749 | Nuclear | 33 |
BdAP2/ERF107 | Bradi3g59300 | 3 | 58524999 | 58529801 | 373 | 5.87 | 40.81537 | Nuclear | 8 |
BdAP2/ERF108 | Bradi3g60120 | 3 | 59149405 | 59152513 | 307 | 4.76 | 33.5793 | Chloroplast | 10 |
BdAP2/ERF109 | Bradi4g21265 | 4 | 24609196 | 24609797 | 193 | 5 | 20.80231 | Cytoplasmic | - |
BdAP2/ERF110 | Bradi4g27850 | 4 | 33135019 | 33136560 | 315 | 4.61 | 34.73159 | Nuclear | 3 |
BdAP2/ERF111 | Bradi4g29010 | 4 | 34421980 | 34423859 | 283 | 6.09 | 30.38067 | Nuclear | 25 |
BdAP2/ERF112 | Bradi4g30617 | 4 | 36372483 | 36375685 | 394 | 7.19 | 42.82752 | Chloroplast | - |
BdAP2/ERF113 | Bradi4g31040 | 4 | 36772794 | 36775742 | 402 | 4.71 | 43.41933 | Nuclear | 18 |
BdAP2/ERF114 | Bradi4g35570 | 4 | 40939109 | 40939843 | 245 | 5.63 | 26.34075 | Chloroplast | 8 |
BdAP2/ERF115 | Bradi4g35580 | 4 | 40942477 | 40943253 | 259 | 5.89 | 27.62901 | Nuclear | 2 |
BdAP2/ERF116 | Bradi4g35590 | 4 | 40947469 | 40948215 | 249 | 4.99 | 26.7398 | Nuclear | 9 |
BdAP2/ERF117 | Bradi4g35600 | 4 | 40952136 | 40952876 | 247 | 4.72 | 26.38781 | Chloroplast | 4 |
BdAP2/ERF118 | Bradi4g35610 | 4 | 40959730 | 40960464 | 245 | 5.58 | 25.92315 | Nuclear | 6 |
BdAP2/ERF119 | Bradi4g35620 | 4 | 40963208 | 40963969 | 254 | 4.94 | 26.84695 | Chloroplast | 4 |
BdAP2/ERF120 | Bradi4g35630 | 4 | 40965956 | 40967004 | 255 | 5.09 | 26.88492 | Chloroplast | 7 |
BdAP2/ERF121 | Bradi4g35650 | 4 | 40976869 | 40977919 | 239 | 4.66 | 25.76346 | Nuclear | 36 |
BdAP2/ERF122 | Bradi4g38930 | 4 | 43634131 | 43635066 | 312 | 6.66 | 33.31991 | Nuclear | 14 |
BdAP2/ERF123 | Bradi4g43877 | 4 | 47462247 | 47467299 | 421 | 5.46 | 45.50805 | Nuclear | 2 |
BdAP2/ERF124 | Bradi5g08380 | 5 | 11092852 | 11094953 | 286 | 9.92 | 30.21775 | Nuclear | 9 |
BdAP2/ERF125 | Bradi5g14960 | 5 | 18387279 | 18391400 | 687 | 5.99 | 71.21576 | Nuclear | - |
BdAP2/ERF126 | Bradi5g16450 | 5 | 19777125 | 19778588 | 488 | 8.34 | 51.67208 | Nuclear | 11 |
BdAP2/ERF127 | Bradi5g17480 | 5 | 20740745 | 20742261 | 290 | 6.34 | 30.56629 | Nuclear | 33 |
BdAP2/ERF128 | Bradi5g17490 | 5 | 20752451 | 20753777 | 365 | 5.04 | 38.57791 | Nuclear | 1 |
BdAP2/ERF129 | Bradi5g17610 | 5 | 20857144 | 20858031 | 296 | 5.4 | 31.03794 | Nuclear | 2 |
BdAP2/ERF130 | Bradi5g17620 | 5 | 20862925 | 20863756 | 252 | 5.23 | 26.4537 | Chloroplast | 3 |
BdAP2/ERF131 | Bradi5g17630 | 5 | 20867545 | 20868171 | 209 | 5.96 | 22.66944 | Chloroplast | - |
BdAP2/ERF132 | Bradi5g17640 | 5 | 20872897 | 20873850 | 212 | 5.21 | 22.43383 | Nuclear | - |
BdAP2/ERF133 | Bradi5g18850 | 5 | 21957497 | 21958102 | 202 | 5.22 | 20.90808 | Nuclear | - |
BdAP2/ERF134 | Bradi5g21250 | 5 | 23939710 | 23940850 | 217 | 9.69 | 22.12031 | Nuclear | 53 |
BdAP2/ERF135 | Bradi5g24100 | 5 | 25842335 | 25845739 | 467 | 6.71 | 49.18327 | Nuclear | 2 |
BdAP2/ERF136 | Bradi5g24110 | 5 | 25859990 | 25861523 | 250 | 9.55 | 26.88308 | Nuclear | 16 |
BdAP2/ERF137 | Bradi5g24360 | 5 | 26013512 | 26017700 | 522 | 6.23 | 55.54319 | Nuclear | - |
BdAP2/ERF138 | Bradi5g24700 | 5 | 26290017 | 26290721 | 143 | 6.29 | 15.30613 | Nuclear | - |
BdAP2/ERF139 | Bradi5g24710 | 5 | 26293257 | 26294078 | 163 | 8.89 | 17.6381 | Mitochondrial | - |
BdAP2/ERF140 | Bradi5g24720 | 5 | 26295256 | 26295857 | 144 | 6.09 | 15.98271 | Nuclear | - |
BdAP2/ERF141 | Bradi5g25570 | 5 | 26828492 | 26829400 | 188 | 8.35 | 19.37177 | Nuclear | 11 |