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Table 2 Variant distribution per effect and pAAF within each gene group

From: Identification of protein-damaging mutations in 10 swine taste receptors and 191 appetite-reward genes

 

Variant frequency class

Strong impact

Mild impact

TASR

Very rare (pMAF < 0.01)

28 (63.6 %)

51 (29.5 %)

Rare (pMAF = [0.010–0.019])

6 (13.6 %)

28 (16.2 %)

Common (pMAF = [0.020–0.979])

10 (22.7 %)

94 (54.3 %)

Total number

44

173

pMAF min-max (average)

0.0016–0.1910 (0.028)

0.0016–0.4920 (0.091)

AR

Very rare (pMAF < 0.01)

184 (52.6 %)

560 (25.5 %)

Rare (pMAF = [0.010-0.019])

41 (11.7 %)

235 (10.7 %)

Common (pMAF = [0.020–0.979])

125 (35.7 %)

1,403 (63.8 %)

Total number

350

2,198

pMAF min-max (average)

0.0017–0.4800 (0.029)

0.0016–0.4980 (0.0992)

  1. The percentages are for the total number of variants within the groups: TASR strong impact, TASR mild impact, AR strong impact and AR mild impact