Fig. 2

Genome coverage for different repeats families. This graphic represents the standardized values of coverage of the three major TE families in tomato genome, Gyspsy, Copia and Class II elements. The coverage is calculated by window of 500 kb with an overlap of 50 kb and standardized values are determined based on these calculations. Positive values (in red) reflect an enrichment while negative values (in green) reflect depletion. Chromosome name and scale (in Mb) are indicated on the outer rim. The interval between two lines on the graph corresponds to a value of 0.5