Skip to main content

Table 1 GO terms repartition in the three compartments of the genome. Exemple of deviation of repartition of fifteen GO terms between the three genomic regions in the tomato genome. Column ‘P-value’ indicates results from the statistical analyzes (chi-square test) while column ‘counting’ gives the number of a GO term in a specific region

From: Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

GO P-value Counting
RR vs INT RR vs RP INT vs RP RR INT RP
GO:0005199 0 0 1 15 1 3
GO:0005515 0,076 0 0,003 596 644 935
GO:0008152 0,03 0 0 86 139 354
GO:0009611 0 0,003 0,099 14 0 7
GO:0009815 0 0 0,278 18 1 7
GO:0016020 0,002 0 0,385 92 165 303
GO:0016168 0,002 0 1 14 2 4
GO:0016706 0,042 0 0,43 13 5 4
GO:0019199 0 0,001 0,424 34 13 30
GO:0030599 0,572 0,008 0 26 37 24
GO:0042936 0,001 0,844 0 8 34 19
GO:0080054 0,003 0,192 0 4 23 2
NOGO 0,009 0,001 0,761 2834 3570 6037