Table 1 GO terms repartition in the three compartments of the genome. Exemple of deviation of repartition of fifteen GO terms between the three genomic regions in the tomato genome. Column ‘P-value’ indicates results from the statistical analyzes (chi-square test) while column ‘counting’ gives the number of a GO term in a specific region
GO | P-value | Counting | ||||
|---|---|---|---|---|---|---|
RR vs INT | RR vs RP | INT vs RP | RR | INT | RP | |
GO:0005199 | 0 | 0 | 1 | 15 | 1 | 3 |
GO:0005515 | 0,076 | 0 | 0,003 | 596 | 644 | 935 |
GO:0008152 | 0,03 | 0 | 0 | 86 | 139 | 354 |
GO:0009611 | 0 | 0,003 | 0,099 | 14 | 0 | 7 |
GO:0009815 | 0 | 0 | 0,278 | 18 | 1 | 7 |
GO:0016020 | 0,002 | 0 | 0,385 | 92 | 165 | 303 |
GO:0016168 | 0,002 | 0 | 1 | 14 | 2 | 4 |
GO:0016706 | 0,042 | 0 | 0,43 | 13 | 5 | 4 |
GO:0019199 | 0 | 0,001 | 0,424 | 34 | 13 | 30 |
GO:0030599 | 0,572 | 0,008 | 0 | 26 | 37 | 24 |
GO:0042936 | 0,001 | 0,844 | 0 | 8 | 34 | 19 |
GO:0080054 | 0,003 | 0,192 | 0 | 4 | 23 | 2 |
NOGO | 0,009 | 0,001 | 0,761 | 2834 | 3570 | 6037 |