Transcriptome analysis in oak uncovers a strong impact of endogenous rhythmic growth on the interaction with plant-parasitic nematodes

Table 1 Pairwise comparison of differentially expressed genes

	Number of differentially expressed contigs
	Co-Pp	Co-Pc	Co-PpPc
RF
Total	91	118	543
Upregulated	46	63	371
Downregulated	45	55	172
SF
Total	895	47	83
Upregulated	289	23	27
Downregulated	606	24	56

Table shows the numbers of differentially expressed contigs in oak microcutting leaves at different plant growth stages following pairwise comparisons. -Control versus P. penetrans (Co-Pp), Control versus P. croceum (Co-Pc), Control versus co-inoculation of P. penetrans and P. croceum (Co-PpPc), RF- root flush and SF- shoot flush. Significance of differential expression was determined using a threshold of Benjamini-Hochberg adjusted P < 0.01 as cut off

ISSN: 1471-2164