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Table 3 Correlation coefficients between the position of genes along the first two major axes with index of glycoprotein genes’ codon usage and synonymous codon usage bias

From: Analysis of codon usage bias of envelope glycoprotein genes in nuclear polyhedrosis virus (NPV) and its relation to evolution

 

Length

GC

GC1

GC2

GC3

GC3s

A3s

T3s

C3s

G3s

ENC

CAI

Axis1

GC

−0.353

            

GC1

−0.498*

0.818**

           

GC2

−0.672**

0.626**

0.730**

          

GC3

−0.208

0.944**

0.685**

0.376

         

GC3s

−0.208

0.944**

0.685**

0.376

1.000**

        

A3s

0.207

−0.901**

−0.601**

−0.334

−0.959**

−0.959**

       

T3s

0.283

−0.961**

−0.754**

−0.455

−0.973**

−0.973**

0.913**

      

C3s

−0.308

0.973**

0.771**

0.502*

0.971**

0.971**

−0.913**

−0.979**

     

G3s

−0.099

0.866**

0.571**

0.211

0.946**

0.946**

−0.973**

−0.911**

0.897**

    

ENC

0.491*

−0.880**

−0.722**

−0.609**

−0.822**

−0.822**

0.763**

0.858**

−0.899**

−0.709**

   

CAI

0.485*

−0.229

−0.142

−0.364

−0.154

−0.154

0.183

0.209

−0.186

−0.158

0.142

  

Axis1

−0.198

0.938**

0.688**

0.378

0.996**

0.996**

−0.957**

−0.969**

0.965**

0.948**

−0.806**

0.361

 

Axis2

0.760**

−0.152

−0.334

−0.671**

0.007

0.007

−0.032

0.044

−0.110

0.203

0.370

0.152

0.018

  1. ** p < 0.01. * p < 0.05