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Table 1 Annotation statistics of detected PUTs

From: Transcriptome responses to temperature, water availability and photoperiod are conserved among mature trees of two divergent Douglas-fir provenances from a coastal and an interior habitat

Cluster type

Number of PUTs

Unique Annotations

PUTs detected with 1 RPM in at least 4 Libraries

59189

 

hit in RefSeq

38248

21218

hit in Picea glauca ORFs

45867

14544

hit in Pinus taeda ORFs

42602

13842

hit in Vitis vinifera

38841

11263

hit in Oryza sativa

37408

11220

hit in Arabidopsis thaliana

34356

10762

B2GO annotation

34375

9062

PLAZA gene family

41175

6330

  1. RefSeq: NCBI plant RefSeq peptide data base, Picea glauca ORFs: Picea glauca full length ESTs, Pinus taeda ORFs: de novo assembled ESTs which have been used to annotate the Pinus taeda genome, Vitis vinifera: Vitis vinifera peptide data base (PLAZA), Oryza sativa: Oryza sativa peptide data base (PLAZA), Arabidopsis thaliana: TAIR10 peptide data base, B2GO: GO annotations inferred by the BLAST2GO pipeline