Table 2 Core genome SNPs specific for C. fetus clades
Clade | Representing | Number of clade-specific SNPs | Number of clade-specific orthologs (annotation) |
|---|---|---|---|
1 | Cff serotype B | 1547 | 2 (hypothetical) |
2 | Cff serotype B | 1703 | 41 (fic, transposase, hypothetical) |
3 | Cff serotype A | 1430 | 6 (R-M system type I and III) |
4 | Cff serotype A | 121 | 0 |
5 | Cfv and Cfvi | 282 | 0 |
5 | Cfv | 5 | 6 |
1–2 | Cff serotype B, total | 571 | 14 (toxin/antitoxin, R-M, S-layer associated) |
3–4 | Cff serotype A, total | 83 | 14 (glycosyltransferase, methyltransferase, ketoreductase) |