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Table 3 The identified non-identical proteins between attenuated strain S2 and virulent strain 1330

From: Comparative genomic analysis between newly sequenced Brucella suis Vaccine Strain S2 and the Virulent Brucella suis Strain 1330

slno

locusa

S2 vs. 1330

Residue change

annotation

1

BS1330_I1369

69â–³

 

hypothetical protein (found)

2

BS1330_I0234

8â–½

FS

IclR family transcriptional regulator (paper)

3

BS1330_I0875

6â–³

 

glycosyl hydrolase family protein(found)

4

BS1330_I2007

2â–½

FS/PS

outer membrane autotransporter (paper)

5

BS1330_I0045

1 ⊙b

H → R

qoxD (found)

6

BS1330_I0093

1 ⊙b

V → A

acnA (found)

7

BS1330_I0235

1 ⊙b

S → Y

sugar ABC transporter, periplasmic sugar-binding protein (paper)

8

BS1330_I0501

1 ⊙b

Q → R

ppdK (surface)

9

BS1330_I0635

1 ⊙b

D → A

omp2b (paper)

10

1 ⊙b

R → H

omp2b (paper)

11

BS1330_I0712

1 ⊙b

Y → H

hypothetical protein (found)

12

BS1330_I0775

1 ⊙b

K → T

hypothetical protein (found)

13

BS1330_I0803

1 ⊙b

V → A

nuoF (paper)

14

BS1330_I0912

1 ⊙b

R → Q

penicillin-binding protein 1A (unknown)

15

BS1330_I1054

1 ⊙b

H → R

acetyl-CoA hydrolase/transferase family protein (surface)

16

BS1330_I1203

1 ⊙b

P → S

serine protease (unknown)

17

BS1330_I1213

1 ⊙b

S → G

rplR (found)

18

BS1330_I1329

1 ⊙b

R → H

dedA family protein (paper)

19

BS1330_I1458

1 ⊙b

H → R

pncA (found)

20

BS1330_I1642

1 ⊙b

A → V

glcB (surface)

21

BS1330_I1655

1 ⊙b

V → A

hypothetical protein (found)

22

BS1330_I1684

1 ⊙b

L → R

glmM (no direct interaction with substrate)

23

BS1330_I1742

1 ⊙b

T → A

pyk (no direct interaction with substrate)

24

BS1330_I1896

1 ⊙b

Y → H

sdhA (found)

25

BS1330_I2038

1 ⊙b

E → K

GMC family oxidoreductase (surface)

26

BS1330_I2085

1 ⊙b

A → V

sensor histidine kinase BvrS (unknown)

27

BS1330_I2149

1 ⊙b

A → D

PhoH family protein (found)

28

BS1330_I0973

1⊙b

A

IS711, transposase orfA

29

BS1330_I1083

1⊙b

P

luciferase family protein

30

BS1330_I1087

1 ⊙b

E

tgt

31

BS1330_I1302

1 ⊙b

I

cobN

32

BS1330_I1971

1 ⊙b

L

short chain dehydrogenase

33

BS1330_I2107

1 ⊙b

I

hypothetical protein

34

BS1330_II0476

78â–³

 

pyridine nucleotide-disulfide oxidoreductase family protein (found)

35

BS1330_II0860

16â–³

FS/PS

eryD (paper)

36

BS1330_II0148

1â–½

FS

3-hydroxyisobutyrate dehydrogenase (paper)

37

BS1330_II0683

1â–³

 

sugar ABC transporter ATPase (found)

38

BS1330_II0999

1â–½

 

amidase (unknown)

39

BS1330_II1074

1â–½b

PS

IclR family transcriptional regulator (paper)

40

BS1330_II0278

1 ⊙b

A → T

nnrR (surface)

41

BS1330_II0440

1 ⊙b

A → E

glpK (surface)

42

BS1330_II0441

1 ⊙b

T → A

major facilitator family transporter (found)

43

BS1330_II0533

1 ⊙b

P → Q

oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (paper)

44

1 ⊙b

S → G

oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (paper)

45

BS1330_II0567

1 ⊙b

S → L

pcs (paper)

46

BS1330_II0571

1 ⊙b

A → P

peptide ABC transporter, periplasmic peptide-binding protein (found)

47

BS1330_II0782

1 ⊙b

V → A

hypothetical protein (found)

48

BS1330_II0786

1 ⊙b

M → T

fadB (found)

49

BS1330_II0805

1 ⊙b

E → K

glucuronate isomerase (interface)

50

BS1330_II0844

1 ⊙b

N → D

aminotransferase, class III (surface)

51

BS1330_II0911

1 ⊙b

W → R

oxidoreductase, molybdopterin-binding (unknown)

52

BS1330_II0980

1 ⊙b

S → P

WD repeat-containing protein (unknown)

53

BS1330_II0990

1 ⊙b

C → W

hypothetical protein (found)

54

BS1330_II1031

1 ⊙b

P → S

lepA (unknown)

55

BS1330_II1137

1 ⊙b

M → L

fliF (paper)

56

BS1330_II0646

1 ⊙b

L

branched-chain amino acid ABC transporter, ATP-binding protein

57

BS1330_II0913

1 ⊙b

G

outer surface protein

58

BS1330_II0945

1 ⊙b

A

branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein

59

BS1330_II1103

1 ⊙b

A

hypothetical protein

  1. Abbreviations and symbols: ⊙ = bp Difference, ▽ = bp Deletion, △ = bp insertion, FS frameshift, PS premature stop; paper: see discussion in the paper
  2. aRepresentative locus from 1330 genomes
  3. bsingle nucleotide polymorphism within ORF