Parameters | The data model | According equations derived from EM |
---|---|---|
\( {E}_{e^{*}} logP\left(i,k\right) \) | The expected likelihood parameters for P(i, k) | Equation (S3) |
P(i, k) | SNP effects related parameters under the extended model (3) | Equation (S4) |
Pr | Equation (10) | |
g i | Equation (8) | |
σ 2e | The overall model (1) | Equation (12) |
β | Equation (13) | |
v | Equation (19) |