Skip to main content

Table 1 The list of all the estimated parameters including the possibility for each SNP (P(i, k)), the proportion parameter (Pr), each SNP effect (g i ), error variance (σ 2 e ), fixed effect (β), and polygenic effects v and the according equation derived from EM steps

From: A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping

Parameters

The data model

According equations derived from EM

\( {E}_{e^{*}} logP\left(i,k\right) \)

The expected likelihood parameters for P(i, k)

Equation (S3)

P(i, k)

SNP effects related parameters under the extended model (3)

Equation (S4)

Pr

Equation (10)

g i

Equation (8)

σ 2e

The overall model (1)

Equation (12)

β

Equation (13)

v

Equation (19)