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Table 9 The list of identified causal mutations by both BayesR and HyB_BR

From: A hybrid expectation maximisation and MCMC sampling algorithm to implement Bayesian mixture model based genomic prediction and QTL mapping

Traits

Loci

Information (known genes)

Range (bp) [Start points ~ End points]

Milk yield

Chr5:75786153

CSF2RB impacting milk yield [47].

[75724620 ~ 75745819]

Chr6:88741491

GC, encoding the vitamin D binding protein, positively impacting the milk yield [48].

[88695940 ~ 88749180]

Chr20:30116920

In association with CCL28/GHR impacting milk production [18].

[31890736 ~ 32199996]

Protein yield

Chr6:87180731

CSN1S1 positively impacting protein yield [48].

[87141556 ~ 87159096]

Chr11:103302351

PAEP impacting protein yield [19].

[103301664 ~ 103306381]

Fat%

Chr5:93945655

MGST1 for Fat percent [49].

[93926791 ~ 3950162]

Fertility

Chr18:57548213

-In association with the gene CEACAM18, Detected by Pryce et al. [50], Cole et al. [51].

~57MBP

Chr21:53500339

- Control the percentage of unassisted births in first calf heifers [52].

~53MBP

Chr23:51131682

In the linkage with the known gene GMDS [53].

~51MBP

All the traits

Chr14:1801116

DGAT1 impacting Fat percent [16].

[1795351 ~ 1804562]