Table 2 Quantitative trait loci (QTL) identified for wheat grain color (GC) evaluated for the seeds harvested from the field experiment of Enid, OK, in,2010 (Enid2010) and from the greenhouse (GH) experiment conducted in Manhattan KS, 2011 (GH2011)
Chromosome | Marker name | Marker type | Chromosome Position (cM)a | Positive allele frequency | Enid2010 | GH2011 | Mean | |||
|---|---|---|---|---|---|---|---|---|---|---|
p | R 2 (%)b | p | R 2 (%) | p | R 2 (%) | |||||
1B | Ra_c35710_395 | 90K | 58.08 | 0.92 | 7.31E-06 | 9.9 | 2.19E-05 | 9.3 | 3.16E-06 | 10.8 |
1B | RAC875_c1188_531 | 90K | 58.08 | 0.92 | 4.62E-06 | 10.4 | 8.06E-06 | 10.3 | 1.33E-06 | 11.7 |
3A | Xwmc559-1 | SSR | 107.20 | 0.94 | 1.25E-04 | 9.8 | 5.00E-04 | 10.6 | 1.57E-04 | 10.8 |
3A | Tamyb10-A1-66 | STS | 114.02 | 0.63 | 8.75E-06 | 7.5 | 1.86E-04 | 10.2 | 2.25E-05 | 9.4 |
3A | Tamyb10-A1-74 | STS | 114.02 | 0.61 | 3.12E-06 | 8.5 | 6.50E-05 | 11.1 | 7.32E-06 | 10.4 |
3B | BS00040742_51 | 90K | 68.26 | 0.36 | 9.42E-06 | 9.7 | - | - | 2.82E-05 | 8.6 |
3B | Tdurum_contig100004_204 | 90K | - | 0.38 | 4.81E-06 | 10.3 | 1.00E-05 | 10.1 | 7.54E-06 | 9.9 |
3B | BS00025679_51 | 90K | 76.22 | 0.58 | 2.45E-05 | 8.7 | 1.88E-06 | 11.8 | 6.30E-06 | 10.1 |
3B | Kukri_c60633_121 | 90K | 76.22 | 0.35 | 8.53E-06 | 9.8 | 2.35E-06 | 11.6 | 4.23E-06 | 10.5 |
3B | Kukri_c60633_257 | 90K | 76.22 | 0.33 | 3.63E-05 | 8.3 | 5.35E-06 | 10.7 | 9.98E-06 | 9.6 |
3B | Excalibur_rep_c97324_623 | 90K | 76.22 | 0.35 | 5.23E-06 | 10.3 | 1.64E-06 | 12.0 | 2.50E-06 | 11.0 |
3B | Tamyb10-B1-1 | STS | 77.36 | 0.26 | 2.26E-05 | 11.1 | 1.06E-05 | 11.0 | 7.46E-06 | 11.8 |
3B | Tamyb10-B1-2 | STS | 77.36 | 0.26 | 7.32E-07 | 11.1 | 8.21E-07 | 11.0 | 3.22E-07 | 11.8 |
3B | Xbarc84 | SSR | 80.77 | 0.31 | 1.89E-05 | 4.1 | - | - | 1.16E-04 | 6.4 |
3D | GENE-1785_118 | 90K | - | 0.42 | 4.74E-06 | 10.4 | 2.42E-09 | 19.2 | 6.49E-08 | 14.8 |
3D | D_GA8KES402JVT1Y_74 | 90K | 11.37 | 0.54 | 1.32E-07 | 14.0 | 3.31E-10 | 21.5 | 1.79E-09 | 18.7 |
3D | BS00067163_51 | 90K | 92.34 | 0.52 | 5.36E-08 | 15.0 | 8.39E-11 | 23.2 | 7.49E-10 | 19.7 |
3D | BS00063075_51 | 90K | - | 0.72 | 8.85E-05 | 7.5 | 5.03E-06 | 10.8 | 9.74E-06 | 9.7 |
3D | Tamyb10-D1-93 | STS | - | 0.56 | 4.31E-11 | 21.9 | 3.66E-13 | 17.5 | 6.51E-13 | 21.0 |
3D | Xbarc376 | SSR | - | 0.94 | - | - | 5.00E-04 | 24.6 | 7.00E-04 | 23.3 |
1A/1D | Xwmc93 | SSR | - | 0.37 | - | - | 6.10E-05 | 5.3 | 3.00E-04 | 7.2 |
1A/2D/3B | Xbarc145 | SSR | - | 0.11 | - | - | 6.62E-05 | 5.0 | 1.65E-04 | 6.7 |
1A/1D/3A/5B | Xbarc148 | SSR | - | 0.70 | 2.50E-07 | 16.6 | 1.03E-06 | 18.7 | 2.27E-07 | 18.4 |