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Table 4 Quantitative trait loci (QTL) for pre-harvest sprouting resistance identified in only one of the experiments conducted in the spring 2012 (2012S) and spring 2013 (2013S) greenhouse experiments and the 2013 Manhattan field experiment (2013MH)

From: Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat

Chromosome

Marker name

Marker type

Chromosome position (cM)a

Positive allele frequency

p

R 2 (%)b

Experiment

2B.1

Excalibur_c1787_1199

90K

7.97

0.81

2.97E-04

7.4

2013S

2B.1

BS00044806_51

90K

10.24

0.72

4.98E-04

6.9

2013S

2B.1

Tdurum_contig51145_476

90K

10.24

0.76

3.65E-04

7.2

2013S

2B.1

BS00022203_51

90K

-

0.17

7.08E-04

6.5

2013S

2B.1

Excalibur_c3524_318

90K

-

0.81

7.05E-04

6.5

2013S

2B.1

Kukri_c16758_443

90K

10.24

0.73

1.31E-04

8.3

2013S

2B.1

wsnp_JD_c3288_4296662

9K

10.24

0.77

7.57E-04

6.4

2013S

2B.1

BS00065556_51

90K

-

0.77

2.56E-04

7.6

2013S

2B.2

wsnp_Ex_c13865_21720466

9K

83.07

0.42

6.42E-04

6.6

2012S

2B.2

wsnp_RFL_Contig3273_3319580

90K

83.07

0.41

7.30E-04

6.4

2012S

2B.2

RAC875_c26697_589

90K

83.07

0.35

4.27E-04

7.0

2012S

2B.2

Tdurum_contig28795_322

90K

-

0.41

7.63E-04

6.4

2012S

6B.1

RAC875_c23251_624

90K

43.28

0.89

2.59E-05

9.4

2013MH

6B.1

BS00066799_51

90K

43.28

0.92

7.13E-05

8.3

2013MH

6B.1

CAP8_c1361_367

90K

43.28

0.89

2.59E-05

9.4

2013MH

  1. aThe positions of markers on W7984 reference sequence
  2. bPhenotypic variance explained by a marker that was significantly associated with pre-harvest sprouting resistance