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Table 6 Common Quantitative trait loci (QTL) identified for grain color evaluated in 2010 field (2010Enid) and 2011 greenhouse (GH) experiments and pre-harvest sprouting resistance evaluated in Manhattan (MH) and Hays in 2013 and 2014 experiments, respectively

From: Genome-wide association analysis on pre-harvest sprouting resistance and grain color in U.S. winter wheat

 

Grain color

PHS resistance

Chromosome

Marker name

Chromosome position (cM)a

2010Enid

2011GH

Mean

2013MH

2013Hays

2014MH

2014Hays

Field_BLUP

p

R 2 (%)b

p

R 2 (%)b

p

R 2 (%)b

p

R 2 (%)c

p

R 2 (%)c

p

R 2 (%)c

p

R 2 (%)c

p

R 2 (%)c

3AL

Xwmc559-1

107.20

1.25E-04

9.8

5.00E-04

10.6

1.57E-04

10.8

-

-

9.00E-04

10.4

-

-

-

-

-

-

3AL

Tamyb10-A1-66

114.02

8.75E-06

7.5

1.86E-04

10.2

2.25E-05

9.4

4.67E-07

12.1

1.82E-05

9.2

3.00E-04

6.8

2.83E-05

8.6

2.01E-06

10.9

3AL

Tamyb10-A1-74

114.02

3.12E-06

8.5

6.50E-05

11.1

7.32E-06

10.4

8.07E-07

11.6

3.47E-05

8.6

-

-

1.16E-04

7.3

1.12E-05

9.4

3DL

BS00067163_51

92.34

5.36E-08

15.0

8.39E-11

23.2

7.49E-10

19.7

7.79E-05

8.3

-

-

-

-

-

-

-

-

3DL

Tamyb10-D1-93

-

4.31E-11

21.9

3.66E-13

17.5

6.51E-13

21.0

6.00E-04

5.7

3.00E-04

6.7

-

-

-

-

-

-

1A/1D/3A/5B

Xbarc148

-

2.50E-07

16.6

1.03E-06

18.7

2.27E-07

18.4

1.38E-08

22.8

3.38E-05

11.9

-

-

2.22E-05

14.5

3.43E-06

14.7

  1. aThe marker positions in a chromosome based on W7984 reference map
  2. bPhenotypic variance explained by a marker that is significantly associated with grain color
  3. cPhenotypic variance explained by a marker that is significantly associated with pre-harvest sprouting resistance