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Table 2 Functional profile ( COG categories ) of C. bolteae and C. clostridioforme

From: Comparative genomics of Clostridium bolteae and Clostridium clostridioforme reveals species-specific genomic properties and numerous putative antibiotic resistance determinants

 

Core genome of C. bolteae

Core genome of C. clostridioforme

Shared between the two species

Specific of C. bolteae

Specific of C. clostridioforme

Total Number of Orthologs groups

3714

3660

2409

1305

1251

Ortholog groups in COGs

3060

2861

2151

909

710

No Hits on COGs

660

805

264

396

541

INFORMATION STORAGE AND PROCESSING

 Translation, ribosomal structure and biogenesis (J)

151

148

137

14

11

 Transcription (K)

309

290

191

118

99

 Replication, recombination and repair (L)

111

135

85

26

50

CELLULAR PROCESSES AND SIGNALING

 Cell cycle control, cell division, chromosome partitioning (D)

43

43

36

7

7

 Defense mechanisms (V)

84

72

52

32

20

 Signal transduction mechanisms (T)

180

139

101

79

38

 Cell wall/membrane/envelope biogenesis (M)

122

137

97

25

40

 Cell motility (Cell motility and secretion) (N)

34

18

0

34

18

 Intracellular trafficking, secretion, and vesicular transport (U)

12

17

9

3

8

 Posttranslational modification, protein turnover, chaperones (O)

84

83

72

12

11

METABOLISM

 Energy production and conversion (C)

194

155

120

74

35

 Carbohydrate transport and metabolism (G)

431

425

296

135

129

 Amino acid transport and metabolism (E)

335

276

238

97

38

 Nucleotide transport and metabolism (F)

115

94

85

30

9

 Coenzyme transport and metabolism (H)

99

89

72

27

17

 Lipid transport and metabolism (I)

50

60

42

8

18

 Inorganic ion transport and metabolism (P)

122

129

94

28

35

 Secondary metabolites biosynthesis, transport and catabolism (Q)

12

0

0

12

0

POORLY CHARACTERIZED

 General function prediction only (R)

366

331

256

110

75

 Function unknown (S)

187

178

150

37

28