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Table 2 Categorization of 7960 differentially expressed transcripts into Cuffcompare classes. Differentially expressed transcripts in developing Arabidopsis embryos belong to different classes (known, novel splice junction, exon skipping, antisense, and intergenic) and can be coding or noncoding based on CodeWise predictions.

From: CoSpliceNet: a framework for co-splicing network inference from transcriptomics data

Transcripts (Cuffcompare class)

Coding

Noncoding

Known (=)

5990

144

Novel splice junction (j)

1474

70

Exon skipping (o)

62

25

Antisense (x and s)

3

124

Intergenic

2

66

Total

7531

429