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Table 5 RefSeq annotation summary

From: A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

Feature

Orenil1.1

O_niloticus_UMD1

Difference (%)

Genes and pseudogenes

30,174

38,412

8,238 (27.3%)

protein-coding

26,329

29,249

2,920 (11.1%)

non-coding

3,508

8,599

5,091 (145.1%)

pseudogenes

337

564

227 (67.4%)

mRNAs

47,700

58,074

10,374 (21.7%)

fully-supported

45,245

55,760

10,515 (23.2%)

partial

3,050

393

−2,657 (−87.1%)

with filled gap(s)

2,480

67

−2,413 (−97.3%)

known RefSeq (NM_)

145

178

33 (22.8%)

model RefSeq (XM_)

47,555

57,896

10,341 (21.7%)

Other RNAs

5,694

12,899

7,205 (126.5%)

fully-supported

5,071

10,881

5,810 (114.6%)

model RefSeq (XR_)

5,071

10,929

5,858 (115.5%)

CDSs

47,892

58,398

10,506 (21.9%)

fully-supported

45,245

55,760

10,515 (23.2%)

partial

2,467

401

−2,066 (−83.7%)

with major correction(s)

817

743

−74 (−9.1%)

known RefSeq (NP_)

145

178

33 (22.8%)

model RefSeq (XP_)

47,555

57,896

10,341 (21.7%)