Table 6 Summary statistics for the various assemblies
Assembly | O_niloticus_wgs_v1 (scaffolds) | Orenil1.1 (anchored to LGs) | O. niloticus Canu (contigs) | O. niloticus Canu broken (contigs) | O_niloticus_UMD1 (anchored to LGs) |
|---|---|---|---|---|---|
Number of contigs/scaffolds | 5,900 | 5,677 | 2,960 | 2,989 | 2,566 |
Total size | 927,725,912 | 927,679,487 | 1,003,343,259 | 1,005,609,889 | 1,009,839,889 |
Longest contig/scaffold/LG | 13,623,339 | 51,042,256 | 20,432,727 | 13,936,383 | 62,059,223 |
Mean contig/scaffold/LG size | 157,242 | 29,879,589.6 | 338,967 | 336,437 | 37,672,228.8 |
NG50 contig/scaffold/LG | 2,629,658 | 26,684,556 | 3,325,464 | 3,110,904 | 37,007,722 |
%Â N | 12.04 | 12.03 | 0 | 0 | 0.42 |
Number of gaps | 71,854 | 72,077 | 0 | 0 | 424 |
Non gap bp | 816,139,901 | 816,140,124 | 1,003,343,259 | 1,005,609,889 | 1,005,610,312 |
Total gap bp | 111,586,011 | 111,539,363 | 0 | 0 | 4,240,000 |