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Table 9 O. niloticus Illumina libraries used for ALE calculations and Pilon polishing

From: A high quality assembly of the Nile Tilapia (Oreochromis niloticus) genome reveals the structure of two sex determination regions

Insert size

NCBI SRA accession IDs

Combined coverage

Platform

Fragment

SRR071589, SRR071593, SRR071594, SRR071601, SRR071604, SRR071605, SRR071610, SRR071619

51.6×

Illumina Genome Analyzer II

3kbp

SRR071588, SRR071591, SRR071597, SRR071599, SRR071603, SRR071612, SRR071614

196.3×

Illumina HiSeq 2000

6–7kbp

SRR071602, SRR071607, SRR071615, SRR071616, SRR071617, SRR071620, SRR071622,

24.6×

Illumina Genome Analyzer II

40kbp

SRR071595, SRR071598, SRR071611

4.8×

Illumina Genome Analyzer II