Table 2 Statistics of inter-molecular RNA-RNA interactions
From: Detecting RNA-RNA interactions in E. coli using a modified CLASH method
Class pair | Reads | Gene pair |
|---|---|---|
tRNA – tRNA | 315 | 8 (glyT – glyU/proM/serV/thrT/tyrU, glyU – tyrU, tyrU-/valV/valW) |
ncRNA – tRNA | 266 | 7 (ffs – glyT/serV/tyrU, ssrS – glyT/glyU/hisR/proM) |
tRNA – rRNA | 199 | 5 (glyT – rrfA, proM – rrfA, serT – rrsG, serV – rrlA/rrlH) |
rRNA – mRNA | 141 | 2 (rrlC – cadA/rpoB) |
rRNA – ncRNA | 74 | 3 (ffs – rrfA/rrfF, ssrS – rrlH) |
rRNA – rRNA | 33 | 1 (rrsG – rrsG) |
rRNA – IGT | 28 | 1 (rrlC –) |
tRNA – tmRNA | 13 | 1 (serV – ssrA) |
tRNA – IGT | 13 | 1 (hisR –) |
Total | 1082 | 29 |