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Table 1 Summary of the raw data obtained by RAD-tag resequencing

From: Footprints of domestication revealed by RAD-tag resequencing in loquat: SNP data reveals a non-significant domestication bottleneck and a single domestication event

Group

Genotype ID

Raw data

Reads (M)

Bases (Mb)

GC (%)

Q20 (%)

Wild

TS_W

23.92

1028.62

35.49

99.01

WF_W

14.16

608.68

35.15

98.55

BD_W

32.03

1357.43

35.86

99.21

LC_W

16.11

676.79

35.01

98.91

SM_W

17.91

788.21

35.25

98.49

MT_W

18.08

741.38

36.96

98.77

BJ_W

33.70

1381.59

34.66

98.66

AL_W

33.19

1460.43

34.98

99.01

HZ_W

57.80

2369.91

34.76

98.95

Average

27.43

1157.00

35.35

98.84

Cultivated

DWX_C

24.82

1067.40

34.96

98.89

BY_C

34.57

1486.72

35.09

99.09

YN_C

32.03

1441.15

35.03

99.11

SJPP_C

23.76

1021.64

34.97

99.14

RTBS_C

67.82

2994.30

34.72

98.20

ZZ6H_C

23.42

1030.38

35.00

99.17

MM_C

95.07

3898.03

34.68

98.90

MBC_C

27.61

1214.65

35.06

99.13

Biano_C

23.10

947.06

34.79

99.08

Algeria_C

21.10

886.33

34.90

99.19

Average

37.33

1598.77

34.92

98.99

Total Mean

32.64

1389.51

35.12

98.92

  1. See Table 6 for genotypes detail