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Table 3 Up-regulated genes in whitefly (B. tabaci MEAM1) in response to feeding on ToCV-infected vs. uninfected tomato for 24, 48, and 72 h

From: Transcriptome analysis of the whitefly, Bemisia tabaci MEAM1 during feeding on tomato infected with the crinivirus, Tomato chlorosis virus, identifies a temporal shift in gene expression and differential regulation of novel orphan genes

 

Gene ID

Annotation

VFa

ToCVb

FCc

adjusted p

a) 24 h

Bta13784

Unknown protein

4.32

16.4

3.8

0.000138689

Bta14319

Unknown protein

4.75

17.25

3.63

1.19E-05

Bta12989

Unknown protein

8.19

26.88

3.28

2.62E-09

Bta02212

FLYWCH and MULE domain containing protein

3.5

11.19

3.2

0.000106094

Bta10158

Unknown protein

7.87

22.33

2.84

3.27E-06

Bta03426

Unknown protein

7.05

18.87

2.68

3.88E-06

Bta12743

Unknown protein

4.12

11.03

2.67

1.59E-06

Bta08587

Unknown protein

75.18

200.93

2.67

2.82E-11

Bta06140

Unknown protein

5.29

13.75

2.6

3.07E-06

Bta00711

Unknown protein

5.27

13.56

2.57

0.000111824

b) 48 h

Bta14011

2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase

19.14

45.44

2.37

0.043929335

Bta12531

Unknown protein

682.9

1411.26

2.07

0.049555196

c) 72 h

Bta15430

Uricase

4.19

14.18

3.39

0.000871375

Bta14011

2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase

24.55

78.78

3.21

3.43E-05

Bta02847

Sulfotransferase

13.64

41.95

3.08

0.003309401

Bta05740

Unknown protein

19.32

50.46

2.61

5.07E-05

Bta05340

α-glucosidase

3.95

10.03

2.54

0.014904518

Bta11838

Facilitated glucose transporter protein 1

13.84

35.04

2.53

0.000436429

Bta00960

Unknown protein

10.72

26.79

2.5

5.83E-05

Bta07749

Facilitated glucose transporter protein 1

42.32

99.55

2.35

0.000946084

Bta08287

Unknown protein

4.5

10.11

2.25

2.85E-06

Bta09733

AGAP011571-PA

5.8

12.92

2.23

0.009044855

Bta03426

Unknown protein

6.31

13.72

2.18

0.010482148

Bta09595

Phosphoribosylformylglycinamidine cyclo-ligase

11.42

24.83

2.17

0.000835974

Bta09412

Protein FAM134C

8.47

18.01

2.13

0.003854887

Bta04103

Patatin-like phospholipase domain-containing protein 2

14.04

29.37

2.09

0.001241884

Bta00373

Calcium-independent phospholipase A2-gamma

21.36

43.86

2.05

0.022562539

Bta06616

Facilitated glucose transporter protein 1

7.24

14.62

2.02

0.001862466

  1. Differentially expressed genes were selected based on criteria of FPKM > 10 with FC ≥ 2 and adjusted p-value <0.05 with edgeR
  2. aFPKM values from virus-free (VF) whiteflies
  3. bFPKM values from ToCV whiteflies
  4. cFold change (FC) for ToCV vs. virus-free (VF) whiteflies. The top 10 genes out of a total of 259 at 24 h are listed, whereas at 48 h and 72 h all differentially regulated genes are shown in the table
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BMC Genomics

ISSN: 1471-2164

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