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Table 4 Down-regulated genes in whitefly (B. tabaci MEAM1) in response to feeding on ToCV-infected vs. uninfected tomato for 24, 48, and 72 h

From: Transcriptome analysis of the whitefly, Bemisia tabaci MEAM1 during feeding on tomato infected with the crinivirus, Tomato chlorosis virus, identifies a temporal shift in gene expression and differential regulation of novel orphan genes

 

Gene ID

Annotation

VFa

ToCVb

FCc

adjusted p

a) 24 h

Bta15563

Vitellogenin-B

21.82

3.19

0.15

6.12E-10

Bta13640

Chemosensory protein

354.23

60.58

0.17

1.13E-09

Bta08821

Glycerol-3-phosphate dehydrogenase

35.65

7.71

0.22

5.56E-09

Bta07380

Unknown protein

14.65

3.65

0.25

0.00598194

Bta13457

Thiol-activated cytolysin

61.35

15.63

0.25

1.12E-10

Bta02903

Heat shock protein 70

60.16

15.82

0.26

8.81E-07

Bta13864

Unknown protein

101.64

28.08

0.28

3.07E-11

Bta15275

Unknown protein

46.31

14

0.3

0.000637335

Bta07359

Transcription elongation factor B polypeptide 2

26.65

8.45

0.32

5.77E-07

Bta07162

DDB1-and CUL4-associated factor

25.98

8.5

0.33

1.39E-05

b) 48 h

Bta13864

Gamma crystallin

202.49

29.99

0.15

0.019515766

Bta14312

Sucrase

15.11

4.19

0.28

6.52E-07

Bta14422

α-glucosidase

31.68

15.53

0.49

0.010355562

c) 72 h

Bta11097

Unknown protein

19.92

4.93

0.25

5.07E-05

Bta07084

Unknown protein

21.71

5.56

0.26

5.78E-09

Bta14126

Unknown protein

206.82

56.75

0.27

2.69E-08

Bta14115

Unknown protein

57.59

15.36

0.27

5.22E-08

Bta00788

Unknown protein

361.81

101.82

0.28

2.32E-13

Bta00782

Unknown protein

24.25

6.88

0.28

1.12E-05

Bta14116

Unknown protein

183.75

53.65

0.29

2.09E-10

Bta00784

Unknown protein

114.92

35.01

0.3

2.32E-13

Bta00783

Unknown protein

20.69

6.28

0.3

4.18E-06

Bta14422

α-glucosidase

18.14

5.85

0.32

1.12E-05

  1. Differentially expressed genes were selected based on criteria of FPKM > 10 with FC ≤ 0.5 and adjusted p-value <0.05 with edgeR
  2. aFPKM values from virus-free (VF) whiteflies
  3. bFPKM values from ToCV whiteflies
  4. cFold change (FC) for ToCV vs. virus-free (VF) whiteflies. Only the top 10 genes out of total of 271 genes downregulated at 24 h, and of 110 genes down-regulated at 72 h, respectively are shown in the table; whereas at 48 h all differentially regulated genes are shown in the table