Discrimination of candidate subgenome-specific loci by linkage map construction with an S1 population of octoploid strawberry (Fragaria × ananassa)

Table 2 Summary statistics of the’Reikou’ linkage map

HG	Number of LGs	Total length [cM]	Mean length [cM]	Number of mapped loci									Mean bin span [cM]	F. vesca genome coverage [%] ^a)
HG	Number of LGs	Total length [cM]	Mean length [cM]	Total	PHR-SNPs	[%]	NMH-SNPs	[%]	Codominant-SSR	[%]	Dominant-SSR	[%]	Mean bin span [cM]	F. vesca genome coverage [%] ^a)
1	5	394.0	78.8	1,111	815	73.4	235	21.2	49	4.4	12	1.1	0.94	75.2
2	4	423.4	105.9	1,628	1,178	72.4	347	21.3	73	4.5	30	1.8	0.80	75.5
3	4	446.1	111.5	1,824	1,357	74.4	383	21.0	64	3.5	20	1.1	0.77	82.9
4	4	320.0	80.0	996	718	72.1	211	21.2	40	4.0	27	2.7	1.26	64.6
5	4	382.2	95.5	1,793	1,314	73.3	411	22.9	48	2.7	20	1.1	0.56	76.8
6	6	481.0	80.2	2,377	1,801	75.8	474	19.9	69	2.9	33	1.4	0.51	91.6
7	4	369.9	92.5	1,845	1,405	76.2	353	19.1	68	3.7	19	1.0	0.53	95.3
Total	31	2,816.5	92.0	11,574	8,588	74.2	2,414	20.9	411	3.6	161	1.4	0.59	80.4

^a) Coverage ratio [%] of F. vesca pseudomolecules (Fvb v2.0.a1) by the ‘Reikou’ linkage map
Number of LGs, total linkage distances, mean linkage distance, numbers of SNP and SSR loci, ratio of PHR- and NMH-SNPs, ratio of codominant- and dominant-SSR loci, mean bin span, coverage for physical distances associated with each LGs on F. vesca (Fvb) v2.0 pseudomolecules are shown

ISSN: 1471-2164