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Table 1 Gossypium hirsutum SOD genes and proteins, and their physico-chemical and biochemical properties

From: Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum

Gene name

Sequence ID

Genomic position

ORF, bp

Protein physicochemical characteristics

Subcellular prediction by CELLO

Subcellular prediction by WoLF PSORT

Predicted Pfam domain

Length, aa

MW, kDa

Isoelectric point (pI)

Instability index

GhCSD1

Gh_A13G1450_NBI-AD1_v1.1

A13:72215416…72228650 +

484

161

16.39

5.50

15.46

Cytoplasm

Cytoplasm

CZ

GhCSD2

Gh_D13G1747_NBI-AD1_v1.1

D13:52235057…52236244 -

457

152

15.19

5.47

17.00

Cytoplasm

Cytoplasm

CZ

GhCSD3

Gh_A13G0817_NBI-AD1_v1.1

A13:39169572…39170465 -

457

152

15.11

5.92

17.07

Cytoplasm

Cytoplasm

CZ

GhCSD4

Gh_D13G1062_NBI-AD1_v1.1

D13:29544943…29545835 -

457

152

15.08

5.92

17.63

Cytoplasm

Cytoplasm

CZ

GhCSD5

Gh_A11G2096_NBI-AD1_v1.1

A11:67392336…67395193 +

460

153

15.73

6.82

11.08

Cytoplasm

Cytoplasm

CZ

GhCSD6

Gh_D11G2412_NBI-AD1_v1.1

D11:48123478…48125573 +

466

155

15.98

6.82

2.99

Cytoplasm

Cytoplasm

CZ

GhCSD7

Gh_A09G2473_NBI-AD1_v1.1

scaffold2314_A09:397…6013 -

1402

467

49.64

6.13

42.69

Chloroplast

Chloroplast

CZ, ZF

GhCSD8

Gh_D09G0858_NBI-AD1_v1.1

D09:33602696…33604208 -

643

214

22.51

6.49

26.61

Chloroplast

Chloroplast

CZ

GhCSD9

Gh_A05G0722_NBI-AD1_v1.1

A05:7521668…7524293 -

691

230

24.17

6.69

22.04

Chloroplast

Chloroplast

CZ

GhCSD10

Gh_D05G0857_NBI-AD1_v1.1

D05:7202468…7204946 -

565

188

19.69

6.23

25.45

Chloroplast

Chloroplast

CZ

GhMSD1

Gh_A10G1595_NBI-AD1_v1.1

A10:86118598…86120747 -

694

231

25.96

8.50

44.62

Mitochondrion

Mitochondrion

IMA, IMC

GhMSD2

Gh_D10G1852_NBI-AD1_v1.1

D10:51772442…51774601 -

694

231

26.08

8.50

45.13

Mitochondrion

Mitochondrion

IMA, IMC

GhMSD3

Gh_A05G2383_NBI-AD1_v1.1

A05:29443309…29446068 -

691

230

25.70

7.14

34.35

Mitochondrion

Mitochondrion

IMA, IMC

GhMSD4

Gh_D05G2648_NBI-AD1_v1.1

D05:27530556…27533301 -

691

230

25.68

7.14

34.16

Mitochondrion

Mitochondrion

IMA, IMC

GhFSD1

Gh_A07G0392_NBI-AD1_v1.1

A07:4977840…4980739 +

928

309

35.65

4.84

39.39

Chloroplast

Chloroplast

IMA, IMC

GhFSD2

Gh_D07G0457_NBI-AD1_v1.1

D07:4887895…4890769 +

925

308

35.52

4.85

44.24

Chloroplast

Chloroplast

IMA, IMC

GhFSD3

Gh_A13G0530_NBI-AD1_v1.1

A13:12258203…12260923 +

769

256

29.33

6.17

29.31

Chloroplast

Chloroplast

IMA, IMC

GhFSD4

Gh_D13G0600_NBI-AD1_v1.1

D13:8345288…8348000 -

769

256

29.26

5.98

30.34

Chloroplast

Chloroplast

IMA, IMC

  1. Gh G. hirsutum, CSD Cu/Zn-SOD domain, FSD Fe-SOD domain, MSD Mn-SOD domain, aa amino acid, MW theoretical molecular weight of protein, CZ Cu/Zn-superoxide dismutase (SOD), IMA Fe/Mn-SODs, alpha-hairpin domain, IMC Fe/Mn-SODs, C-terminal domain, ZF C2H2-type Zn finger