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Table 5 Summary of 33 nonsynonymous SNPs that are significantly different between populations

From: Genomic adaptation to agricultural environments: cabbage white butterflies (Pieris rapae) as a case study

Unigene

Position

GST

G’ST

D

Ï•ST

Description

GO annotationa

c5933_g1

548

0.14

0.33

0.12

0.58

Transport and Golgi organization 11

C:cellular_component; F:isomerase activity

c7209_g1

1211

0.15

0.44

0.23

0.53

FK506-binding 59 isoform X1

P:protein folding

c10952_g1

794

0.18

0.44

0.19

0.51

Ankyrin repeat domain-containing 11

C:cellular_component

c11274_g1

630

0.17

0.43

0.19

0.54

UDP-galactose 4-epimerase

P:biological_process; F:molecular_function

c11590_g2

235

0.14

0.33

0.10

0.38

BCL-6 corepressor 1

 

c11789_g1

423

0.14

0.38

0.17

0.45

hypothetical protein KGM_20694

C:cellular_component

c11993_g1

616

0.16

0.39

0.15

0.60

alpha-tocopherol transfer -like

P:transport; F:transporter activity; C:intracellular

c12584_g1

1268

0.13

0.37

0.18

0.44

PREDICTED: uncharacterized protein LOC106138810, partial

 

c12711_g1

1584

0.16

0.35

0.11

0.53

Recombination repair 1

C:nucleus; F:DNA binding; F:nuclease activity; F:lyase activity; F:ion binding; P:DNA metabolic process; P:response to stress

c13334_g1

1471

0.16

0.45

0.24

0.49

aspartate--tRNA ligase, cytoplasmic

C:cytoplasm; F:ion binding; P:tRNA metabolic process; P:cellular amino acid metabolic process; F:ligase activity; P:translation

c13731_g1

1607

0.13

0.35

0.14

0.51

Chorion b-ZIP transcription factor

F:DNA binding; F:nucleic acid binding transcription factor activity; P:cellular nitrogen compound metabolic process; P:biosynthetic process

c14347_g1

644

0.11

0.26

0.06

0.46

aldehyde dehydrogenase X, mitochondrial-like

F:oxidoreductase activity

c15052_g1

791

0.16

0.35

0.12

0.43

glutamic acid-rich -like

P:biological_process; C:extracellular region; F:molecular_function

c15052_g1

873

0.15

0.37

0.14

0.45

glutamic acid-rich -like

P:biological_process; C:extracellular region; F:molecular_function

c15359_g2

775

0.13

0.28

0.08

0.38

PREDICTED: uncharacterized protein LOC101740601

C:membrane; C:integral component of membrane

c15377_g1

1122

0.19

0.43

0.16

0.53

prion-like-(Q N-rich) domain-bearing 25

C:membrane; C:integral component of membrane

c15434_g1

67

0.15

0.44

0.25

0.56

cholinesterase 1-like

P:metabolic process; F:hydrolase activity

c15846_g1

1999

0.16

0.39

0.16

0.63

nicastrin

C:cellular_component

c15990_g1

1062

0.14

0.42

0.24

0.51

pancreatic triacylglycerol lipase-like

P:biological_process; C:extracellular region; F:molecular_function

c16008_g1

531

0.22

0.55

0.30

0.71

nuclear pore complex Nup50

C:nuclear envelope; P:nucleocytoplasmic transport; P:protein targeting; P:vesicle-mediated transport; P:signal transduction; P:cell differentiation; P:anatomical structure development; P:neurological system process; F:molecular_function

c16008_g1

789

0.24

0.58

0.32

0.78

nuclear pore complex Nup50

C:nuclear envelope; P:nucleocytoplasmic transport; P:protein targeting; P:vesicle-mediated transport; P:signal transduction; P:cell differentiation; P:anatomical structure development; P:neurological system process; F:molecular_function

c16008_g1

853

0.22

0.49

0.21

0.73

nuclear pore complex Nup50

C:nuclear envelope; P:nucleocytoplasmic transport; P:protein targeting; P:vesicle-mediated transport; P:signal transduction; P:cell differentiation; P:anatomical structure development; P:neurological system process; F:molecular_function

c16231_g1

2477

0.19

0.45

0.19

0.74

serine palmitoyltransferase 1

F:ion binding; P:biosynthetic process; C:cellular_component

c16497_g2

1985

0.18

0.44

0.20

0.57

adenosylhomocysteinase

P:sulfur compound metabolic process; P:cofactor metabolic process; C:cytosol; P:cellular amino acid metabolic process; P:cellular nitrogen compound metabolic process; F:molecular_function

c16508_g2

391

0.12

0.32

0.12

0.57

phosphoenolpyruvate carboxykinase

P:small molecule metabolic process; P:carbohydrate metabolic process; F:lyase activity; F:ion binding; P:biosynthetic process; F:kinase activity

c16613_g1

749

0.18

0.41

0.14

0.65

translocator -like isoform X2

C:intracellular

c17019_g1

1437

0.16

0.44

0.23

0.54

FAM114A2 isoform X1

 

c17117_g1

1294

0.13

0.32

0.11

0.57

saccharopine dehydrogenase-like oxidoreductase

F:oxidoreductase activity; C:cellular_component

c17365_g1

1932

0.14

0.34

0.12

0.49

otopetrin-2-like isoform X1

C:cellular_component

c17954_g2

1970

0.15

0.36

0.12

0.61

probable uridine nucleosidase 2 isoform X2

P:metabolic process; F:hydrolase activity

c18004_g1

465

0.22

0.56

0.32

0.67

phosphatase 1 regulatory subunit 15A

C:cellular_component

c18004_g1

566

0.18

0.48

0.26

0.59

phosphatase 1 regulatory subunit 15A

C:cellular_component

c18452_g1

386

0.14

0.31

0.08

0.55

serine-rich adhesin for platelets-like isoform X1

F:calcium ion binding; C:membrane; C:integral component of membrane; P:cell adhesion; P:homophilic cell adhesion via plasma membrane adhesion molecules; C:plasma membrane

  1. aGO descriptions are designated as cellular component (C), molecular function (F), or biological process (P)