Table 3 Comparison of glucosinolate-related genes of N.officinale with the most orthologous genes
Genes | Length (amino acid) | Sequence form | Orthologous genes (Accession no.) | Identity (%) |
|---|---|---|---|---|
NoMYB28 | 370 | Full-length | Arabidopsis thaliana MYB28 (NP_200950.1) | 83 |
Brassica rapa MYB28 (ADQ92843.1) | 77 | |||
Brassica oleracea MYB28 (CBI71385.1) | 74 | |||
NoMYB29 | 350 | Full-length | Arabidopsis thaliana MYB29 (NP_196386.13) | 78 |
Brassica juncea MYB29-2 (AFY09821.1) | 75 | |||
Brassica oleracea MYB29 (AKD49017.1) | 71 | |||
NoMYB34 | 53 | Partial-length | Brassica oleracea MYB34 (BAM78216.1) | 98 |
Brassica rapa MYB34-3 (ADV17461.1) | 98 | |||
Arabidopsis thaliana MYB34 (NP_200897.1) | 96 | |||
NoMYB51 | 122 | Partial-length | Eruca vesicaria MYB51 (AGS49160.1) | 81 |
Arabidopsis thaliana MYB51 (NP_173292.1) | 90 | |||
Brassica rapa MYB51-1 (ACR48187.1) | 80 | |||
NoMYB122 | 35 | Partial-length | Arabidopsis thaliana MYB122 (NP_177548.1) | 94 |
Arabidopsis lyrata MYB122 (XP_002887524.1) | 94 | |||
Brassica rapa MYB122 (XP_009106064.1) | 91 | |||
NoIQD1-1 | 81 | Partial-length | Arabidopsis thaliana IQD1 (NP_187582.1) | 86 |
Camelina sativa IQD1 (XP_010464624.1) | 81 | |||
Brassica rapa IQD1 (XP_009123236.1) | 76 | |||
NoDof1.1 | 256 | Partial-length | Arabidopsis thaliana Dof 1.1(NP_850938.1) | 78 |
Camelina sativa Dof1.1 (XP_010487779.1) | 79 | |||
Brassica rapa Dof1.1 (XP_009110928.1) | 68 | |||
NoBCAT4 | 352 | Full-length | Brassica oleracea BCAT4 (AJF21970.1) | 83 |
Brassica rapa BCAT4 (ACR10245.1) | 82 | |||
Arabidopsis lyrata BCAT4 (XP_002885325.1) | 79 | |||
NoMAM1 | 500 | Full-length | Arabidopsis thaliana MAM1 (NP_197692.1) | 81 |
Camelina sativa MAM1 (XP_010454580.1) | 80 | |||
Brassica rapa MAM1 (XP_009130133.1) | 75 | |||
NoMAM3 | 302 | Partial-length | Camelina sativa MAM3 (XP_010428949.1) | 82 |
Boechera divaricarpa MAM3 (CAJ55514.1) | 82 | |||
Arabidopsis thaliana MAM3 (NP_197693.1) | 81 | |||
NoCYP79F1 | 539 | Full-length | Brassica oleracea CYP79F1 (ACB59213.1) | 84 |
Brassica napus CYP79F1 (AGO59948.1) | 83 | |||
Brassica rapa CYP79F1 (ACR10252.1) | 83 | |||
NoCYP83A1 | 502 | Full-length | Arabidopsis thaliana CYP83A1 (NP_193113.1) | 88 |
Raphanus sativus CYP83A1 (AHB11194.1) | 88 | |||
Brassica oleracea CYP83A1 (AIK28472.1) | 87 | |||
NoGSTF11 | 214 | Partial-length | Arabidopsis lyrata GSTF11 (XP_002882279.1) | 91 |
Camelina sativa GSTF11 (XP_010463766.1) | 91 | |||
Arabidopsis thaliana GSTF11 (NP_186969.1) | 88 | |||
NoGSTF20 | 94 | Partial-length | Arabidopsis thaliana GSTF20 (NP_177958.1) | 91 |
Camelina sativa GSTF20 (XP_010472052.1) | 91 | |||
Brassica oleracea GSTF20 (XP_013592747.1) | 88 | |||
NoGGP1 | 250 | Full-length | Brassica rapa GGP1 (XP_009108982.1) | 87 |
Brassica oleracea GGP1 (XP_013598031.1) | 88 | |||
Camelina sativa GGP1 (XP_010438166.1) | 87 | |||
NoSUR1 | 376 | Full-length | Arabidopsis thaliana SUR1 (NP_179650.1) | 90 |
Eruca vesicaria SUR1 (AGS49169.1) | 89 | |||
Brassica rapa SUR1 (ACH41755.1) | 89 | |||
NoUGT74B1 | 459 | Full-length | Arabidopsis thaliana UGT74B1 (XP_010477734) | 88 |
Camelina sativa UGT74B1 (XP_010477734) | 85 | |||
Brassica rapa UGT74B1 (XP_009115475.1) | 84 | |||
NoUGT74C1 | 237 | Partial-length | Arabidopsis thaliana UGT74C1 (NP_180738.1) | 89 |
Camelina sativa UGT74C1 (XP_010469678.1) | 89 | |||
Brassica oleracea UGT74C1 (XP_013637126.1) | 87 | |||
NoST5b | 341 | Full-length | Arabidopsis thaliana ST5b (NP_177549.1) | 84 |
Camelina sativa ST5b (XP_010416243.1) | 80 | |||
Brassica rapa ST5b (XP_009106065.1) | 80 | |||
NoST5a | 337 | Full-length | Arabidopsis thaliana ST5a (NP_177550.1) | 96 |
Brassica rapa ST5a (ACR10265.1) | 91 | |||
Camelina sativa ST5a (XP_010419185.1) | 96 | |||
NoST5c | 350 | Full-length | Arabidopsis thaliana ST5c (NP_173294.1) | 89 |
Camelina sativa ST5c (XP_010459484.1) | 87 | |||
Brassica rapa ST5c (ACR10273.1) | 85 | |||
NoFMO GS-OX2 | 122 | Partial-length | Camelina sativa FMO GS-OX2 (XP_010473477.1) | 85 |
Brassica oleracea FMO GS-OX2 (XP_013612296.1) | 80 | |||
Brassica rapa FMO GS-OX2 (XP_009113068.1) | 79 | |||
NoFMO GS-OX5 | 456 | Full-length | Arabidopsis thaliana FMO GS-OX5 (NP_172678.3) | 86 |
Brassica oleracea FMO GS-OX5 (FMO GS-OX5) | 86 | |||
Brassica rapa FMO GS-OX5 (XP_009110664.1) | 85 | |||
NoCYP79B2 | 541 | Full-length | Arabidopsis lyrata CYP79B2 (XP_002866896.1) | 94 |
Brassica oleracea CYP79B2 (ADW54459.1) | 94 | |||
Eruca vesicaria CYP79B2 (AGM16417.1) | 93 | |||
NoCYP79B3 | 144 | Partial-length | Brassica rapa CYP79B3 (ACR10255.1) | 91 |
Arabidopsis lyrata CYP79B3 (XP_002878610) | 90 | |||
Brassica napus CYP79B3 (AAN76810.1) | 73 | |||
NoCYP83B1 | 448 | Partial-length | Brassica oleracea CYP83B1 (ADW54460.1) | 96 |
Arabidopsis thaliana CYP83B1 (NP_194878.1) | 95 | |||
Raphanus sativus CYP83B1 (AHB11193.1) | 96 | |||
NoGSTF9 | 213 | Full-length | Brassica rapa GSTF9 (XP_009132756.1) | 97 |
Brassica oleracea GSTF9 (XP_013636508.1) | 97 | |||
Arabidopsis thaliana GSTF9 (NP_180643.1) | 96 | |||
NoGSTF10 | 48 | Partial-length | Brassica rapa GSTF10 (XP_009132757.1) | 90 |
Brassica oleracea GSTF10 (XP_013622385.1) | 90 | |||
Arabidopsis thaliana GSTF10 (NP_180644.1) | 88 | |||
NoCYP81F2 | 170 | Partial-length | Arabidopsis thaliana CYP81F2 (NP_200532.1) | 89 |
Arabidopsis lyrata CYP81F2 (XP_002864506.1) | 89 | |||
Arabis alpina CYP81F2 (AEM44335.1) | 81 | |||
NoCYP81F3 | 231 | Partial-length | Arabidopsis thaliana CYP81F3 (NP_568025.1) | 93 |
Arabidopsis lyrata CYP81F3 (XP_002868991.1) | 93 | |||
Brassica napus CYP81F3 (CDY44041.1) | 92 | |||
NoIGMT | 373 | Full-length | Arabidopsis thaliana IGMT (NP_173534.1) | 91 |
Camelina sativa IGMT (XP_010498564.1) | 90 | |||
Brassica rapa IGMT (XP_009149591.1) | 91 | |||
NoPEN2 | 405 | Partial-length | Arabidopsis thaliana PEN2 (NP_181977.1) | 90 |
Arabis alpina PEN2 (AEM44334.1) | 90 | |||
Brassica rapa PEN2 (XP_009143040.1) | 87 | |||
NoTGG2 | 532 | Partial-length | Armoracia rusticana TGG2 (AAV71147.1) | 90 |
Arabidopsis thaliana TGG2 (BAE98479.1) | 70 | |||
Tarenaya hassleriana TGG2 (XP_010519862.1) | 67 |