Differentially expressed genes from RNA-Seq and functional enrichment results are affected by the choice of single-end versus paired-end reads and stranded versus non-stranded protocols

Table 3 Concordance for GO terms found using goana function

^aPercentage concordance in the top GO terms (by FDR) found using the goana function of limma when using the SE and PE datasets for each of the experiments
^bPercentage concordance in the top 20 GO terms (by FDR) found using the goana function of limma when using the SE and PE datasets for each of the experiments

ISSN: 1471-2164