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Table 3 Observed QTLs for stem cell wall composition and conversion efficiency characters

From: Genetic complexity of miscanthus cell wall composition and biomass quality for biofuels

QTL

Year

LG

Position

1-LOD support interval

2-LOD support interval

LOD

PVE

(cM)

(cM)

(cM)

NDF 1

2013

2c

0.0

Start - 4.0

Start - 8.7

5.77

13.9

NDF 2

2014

3a

61.0

52.0–67.1

48.0–76.5

4.98

13.6

NDF 2

2013

3a

64.1

51.0–67.1

33.3–70.6

3.96

9.5

NDF 3

2014

3a

101.8

96.1–106.8

41.9–134.3

3.70

10.3

NDF 4

2013

3b

190.1

188.9–195.1

186.9–213.0

4.33

10.4

NDF 5

2013

3c

4.0

Start - 9.6

Start - 12.6

5.73

15.0

NDF 6

2014

3d

40.1

36.1–55.3

20.3–58.3

4.00

10.3

NDF 6

2013

3d

44.2

37.1–50.4

36.1–55.3

4.72

12.9

NDF 7

2013

4c

81.1

71.4–95.1

67.4–102.1

3.77

11.0

NDF 8

2014

4c

156.7

148.7–164.7

143.0–168.7

3.58

10.2

NDF 9

2013

6c

98.8

86.8–104.0

80.8–131.0

3.59

10.1

ADF 1

2013

3b

191.1

187.9–197.5

185.9–213.0

3.81

9.6

ADF 2

2014

4b7b

40.7

31.9–48.7

25.8–66.6

3.74

9.3

CEL 1

2013

6c

181.9

176.9–183.3

143.8–183.3

3.98

10.8

CEL/cw 1

2014

6b

18.5

14.8–22.5

4.2–60.1

4.44

11.2

CEL/cw 2

2013

6b

33.8

26.8–40.8

10.2–50.9

7.54

23.0

CEL/cw 2

2014

6b

36.8

27.8–48.9

6.2–57.1

4.78

14.6

CEL/cw 3

2014

6c

81.8

48.1–92.8

38.0–98.8

4.85

15.8

CEL/cw 3

2013

6c

82.8

72.8–89.8

53.1–92.8

9.02

29.1

CEL/cw 4

2014

6c

136.0

129.0–147.8

125.0–153.8

4.14

11.2

CEL/cw 4

2013

6c

147.8

126.0–157.8

122.0–162.8

4.61

16.5

HEM 1

2013

2c

2.0

Start - 6.7

Start - 8.7

3.78

10.3

HEM 2

2013

6b

34.8

26.8–59.1

18.5–63.1

4.88

15.5

HEM 2

2014

6b

48.9

28.8–59.1

18.5–63.1

4.16

10.7

HEM 3

2014

6c

79.8

71.8–89.8

45.1–94.8

6.06

18.5

HEM 3

2013

6c

81.8

71.8–89.8

52.1–92.8

7.81

25.6

HEM/cw 1

2013

4b7b

39.7

31.9–42.5

27.8–46.7

4.40

11.6

HEM/cw 2

2013

4d7d

55.8

52.5–58.8

49.5–61.8

3.64

9.3

HEM/cw 3

2014

6c

79.8

52.1–89.8

36.0–95.8

5.11

16.1

HEM/cw 3

2013

6c

74.8

52.1–85.8

45.1–90.8

4.61

12.7

ADL 1

2013

3c

2.0

Start - 7.0

Start - 11.6

5.18

13.4

ADL 2

2013

4c

74.4

66.4–95.1

62.4–103.1

3.87

10.8

ADL 3

2013

4d7d

31.7

26.7–37.0

16.1–4Start

3.76

11.4

ADL 4

2013

6c

116.7

109.8–132.0

106.8–138.8

3.81

10.2

ADL 5

2013

8c

7.0

2.0–9.5

Start - 11.5

5.57

14.4

ADL 6

2014

8c

28.8

25.6–33.8

20.6–36.8

5.25

13.4

ADL/cw 1

2013

3c

2.0

Start - 7.0

Start - 13.6

4.45

11.6

ADL/cw 2

2013

4d7d

31.7

26.7–37.0

9.0–4Start

3.79

11.4

ADL/cw 3

2013

4d7d

55.5

50.5–60.8

47.5–63.8

3.78

9.9

ADL/cw 4

2013

8c

6.0

2.0–9.5

Start - 12.5

5.51

14.8

ADL/cw 5

2014

8c

28.8

24.6–33.8

20.6–35.8

5.61

14.2

KL 1

2014

1b

71.7

68.2–74.7

57.2–102.9

5.23

12.8

KL 2

2013

1b

87.9

80.9–94.9

77.9–98.9

6.45

21.0

KL 2

2014

1b

87.9

79.9–96.9

56.2–106.5

4.84

16.3

KL 3

2014

1c

77.8

72.1–84.8

58.5–114.0

3.69

9.9

KL 4

2014

2a

0.0

Start - 2.0

Start - 4.0

4.66

11.4

KL 5

2014

2a

49.1

45.1–54.9

44.1–56.9

5.98

16.7

KL 6

2014

2d

102.3

95.3–105.3

81.3–118.1

5.58

15.0

KL 7

2014

3a

63.0

52.0–67.1

46.0–69.1

4.07

10.0

KL 8

2014

3d

25.3

18.3–33.3

10.6–60.5

4.30

14.6

KL 9

2014

4c

157.7

150.7–163.7

147.7–165.7

5.57

15.0

KL 10

2014

6d

76.0

66.0–87.9

62.0–120.3

3.87

10.3

KL 11

2014

6d

100.8

94.8–112.3

62.0–120.3

3.92

12.8

GLU 1

2013

6b

12.2

7.2–17.5

5.2–22.5

8.22

19.4

GLU 2

2013

6b

33.8

23.8–42.8

20.5–47.9

6.75

19.8

GLU 3

2013

6c

80.8

71.2–89.8

61.1–93.8

6.84

22.5

GLU 3

2014

6c

71.8

68.1–79.8

55.1–84.8

4.09

9.9

GLU 4

2014

10a

68.6

58.9–75.8

48.7–86.9

4.67

11.6

XYL 1

2014

4b7b

39.7

30.9–44.7

23.8–48.7

4.45

11.6

XYL 2

2014

4d7d

35.0

28.7–39.0

25.7–40.7

4.34

10.5

XYL 3

2014

4d7d

55.8

48.5–59.8

46.5–62.8

4.57

11.3

XYL 4

2014

8c

30.8

23.6–37.4

19.6–37.4

4.29

12.0

ARA 1

2014

1d

6.0

1.0–9.4

Start - 10.4

4.26

11.7

ARA 2

2013

2c

85.2

77.9–93.2

53.4–101.0

3.87

12.1

ARA 3

2014

2d

80.3

77.3–86.3

72.9–87.6

4.24

10.2

ARA 4

2014

2d

100.3

94.3–105.3

87.6–111.1

4.95

12.4

ARA 5

2014

3d

26.3

17.3–35.1

5.6–57.3

3.69

12.9

ARA 6

2013

4b7b

104.7

100.3–110.7

96.5–115.2

4.39

10.9

ARA 6

2014

4b7b

103.3

98.5–112.3

96.5–115.3

4.77

12.8

ARA 7

2013

4b7b

193.3

182.3–200.1

177.3–201.8

4.18

10.8

ARA 8

2013

4d7d

109.1

99.1–119.4

79.6–129.0

4.18

13.1

ARA 8

2014

4d7d

110.1

101.1–119.4

96.8–121.4

3.85

12.1

ARA 9

2013

5c

57.8

55.2–60.8

54.2–62.8

5.17

12.3

ARA 9

2014

5c

57.8

54.2–61.8

52.5–62.8

4.42

10.6

ARA 10

2013

5c

72.2

65.2–76.7

62.8–77.7

4.33

11.6

ARA 10

2014

5c

72.2

64.2–76.7

63.2–78.7

3.79

10.2

ARA 11

2013

6b

33.8

24.8–42.8

14.8–51.9

6.94

21.0

ARA 11

2014

6b

50.9

34.8–56.1

28.8–59.1

6.11

15.2

ARA 12

2013

6c

65.1

54.1–71.8

49.1–71.8

7.57

21.0

ARA 12

2014

6c

65.1

54.1–71.8

48.1–71.8

7.40

21.0

ARA 13

2014

6c

83.8

73.8–94.8

73.8–99.8

7.81

23.8

ARA 13

2013

6c

85.8

76.8–95.8

72.8–99.8

8.55

27.4

ARA 14

2013

6c

149.8

139.8–162.8

136.8–173.3

4.12

15.1

ARA 14

2014

6c

136.0

124.0–150.8

119.0–162.8

4.33

11.0

ARA 15

2014

10c

10.0

1.0–20.7

Start - 25.7

4.47

13.0

SacR 1

2013

3b

23.6

16.0–30.6

12.0–55.0

4.01

11.0

SacR 2

2013

3c

7.0

2.0–11.6

Start - 14.6

6.43

16.1

SacR3

2013

5c

58.8

54.2–61.8

44.0–74.7

3.92

10.2

SacR 4

2013

6b

33.8

25.8–42.8

18.5–51.9

4.31

14.7

SacR 5

2013

6c

55.1

44.0–65.1

39.0–71.2

4.44

15.3

SacR 6

2013

6c

90.8

83.8–99.8

79.8–107.8

5.96

21.9

SacR 7

2013

10b

52.2

44.8–56.7

40.8–59.7

4.19

10.7

CC 1

2014

4b7b

32.9

24.8–42.5

15.5–48.7

4.26

11.4

CC 2

2013

4d7d

30.7

26.7–36.0

17.1–39.0

4.12

12.8

CC 3

2013

8c

7.5

3.0–12.5

Start - 34.8

3.75

9.6

CC 4

2014

8c

28.8

26.6–32.8

22.6–34.8

5.65

14.7

HC 1

2014

6b

44.7

35.8–49.9

29.8–75.2

3.79

9.2

HC 2

2014

6c

71.8

64.1–79.8

54.1–85.8

4.78

11.4

GC 1

2013

1b

76.7

69.2–91.9

68.2–94.9

5.38

13.7

GC 1

2014

1b

83.9

72.7–92.9

69.2–96.9

4.62

14.7

GC 2

2013

1c

55.0

45.3–57.0

41.2–65.5

4.65

13.2

GC 2

2014

1c

54.9

44.2–62.5

39.3–64.5

4.19

11.7

GC 3

2013

1c

61.5

60.5–62.5

42.4–64.5

4.96

12.4

GC 4

2013

3c

0.0

Start - 8.0

Start - 17.6

7.00

9.8

GC 5

2014

4b7b

95.5

91.8–97.5

89.8–99.5

4.62

14.7

GC 6

2014

6d

123.3

113.3 - End

107.3 - End

3.94

14.5

GC 7

2013

8c

7.0

1.0–10.5

Start - 12.5

5.24

13.5

HD1

2014

1c

37.3

35.3–46.3

31.0–50.3

3.93

9.8

HD2

2014

3c

0.0

Start - 4.0

Start - 7.0

3.89

9.4

HD3

2014

6d

0.0

Start - 5.0

Start - 9.0

3.60

8.9

  1. LG linkage group, PVE percentage variance explained